Cow genome map
| Conread name: | rfat0139_b21.y1 |
| Conread position: | 1-180 |
| Cow position: | chr18:26845652-26845472 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-212 |
| Cow position: | chr18:7699211-7699423 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 24, 100 |
| Conread position: | 1-510 |
| Cow position: | chr18:43129656-43129146 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 87 |
| Conread position: | 1-537 |
| Cow position: | chr18:37492364-37491830 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 2-212 |
| Cow position: | chr18:1062144-1062357 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-316 |
| Cow position: | chr18:33851101-33850780 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 19, 151 |
| Conread position: | 2-342 |
| Cow position: | chr18:970340-970000 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 71 |
| Conread position: | 2-349 |
| Cow position: | chr18:43060031-43060365 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 2-506 |
| Cow position: | chr18:31996506-31995984 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 19 |
| Conread position: | 2-527 |
| Cow position: | chr18:30231993-30232501 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 92 |
| Conread position: | 2-532 |
| Cow position: | chr18:28084619-28084078 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 489 |
| Conread position: | 2-534 |
| Cow position: | chr18:40484571-40484026 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 2-536 |
| Cow position: | chr18:8965863-8965345 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 347 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 19, 110 |
| Conread position: | 2-536 |
| Cow position: | chr18:16871815-16871302 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 70 |
| Conread position: | 2-536 |
| Cow position: | chr18:24453365-24452839 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 91 |
| Conread position: | 2-536 |
| Cow position: | chr18:36122289-36122808 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 66 |
| Conread position: | 3-430 |
| Cow position: | chr18:12997137-12996710 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 3-444 |
| Cow position: | chr18:23659324-23659776 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 176 |
| Conread position: | 3-510 |
| Cow position: | chr18:15485631-15486124 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 202 |
| Conread position: | 3-535 |
| Cow position: | chr18:17670400-17670928 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 143 |
| Conread position: | 3-536 |
| Cow position: | chr18:15858733-15858197 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 111 |
| Conread position: | 4-196 |
| Cow position: | chr18:47281693-47281887 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 4-373 |
| Cow position: | chr18:225854-226222 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 4-380 |
| Cow position: | chr18:43112828-43113176 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 6-345 |
| Cow position: | chr18:4978288-4978635 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 10-460 |
| Cow position: | chr18:54629597-54630049 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 86 |
| Conread position: | 18-222 |
| Cow position: | chr18:37334353-37334148 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 24-352 |
| Cow position: | chr18:35368992-35369309 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 20, 105 |
| Conread position: | 24-536 |
| Cow position: | chr18:24712430-24712950 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 158 |
| Conread position: | 25-237 |
| Cow position: | chr18:20151152-20150942 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 109, 30 |
| Conread position: | 25-361 |
| Cow position: | chr18:21797641-21797297 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 31-455 |
| Cow position: | chr18:42080485-42080916 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 18 |
| Conread position: | 42-191 |
| Cow position: | chr18:25847821-25847968 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 91, 57 |
| Conread position: | 61-357 |
| Cow position: | chr18:14779033-14779319 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 190, 79 |
| Conread position: | 139-480 |
| Cow position: | chr18:32859590-32859938 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 77 |
| Conread position: | 155-361 |
| Cow position: | chr18:28935063-28935273 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 162-332 |
| Cow position: | chr18:38342105-38342276 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 92, 21 |
Show alignments to all cow chromosomes.