Cow genome map
| Conread name: | rfat0139_b21.y1 |
| Conread position: | 1-194 |
| Cow position: | chr2:71468048-71468242 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 157 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 25, 73 |
| Conread position: | 1-260 |
| Cow position: | chr2:60942683-60942423 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 248 |
| Conread position: | 1-335 |
| Cow position: | chr2:27146085-27146426 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 116 |
| Conread position: | 1-535 |
| Cow position: | chr2:4935506-4936033 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 201 |
| Conread position: | 2-258 |
| Cow position: | chr2:21407494-21407235 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 19, 89 |
| Conread position: | 2-260 |
| Cow position: | chr2:80840149-80840409 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 58 |
| Conread position: | 2-264 |
| Cow position: | chr2:3786959-3787225 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 20, 249 |
| Conread position: | 2-326 |
| Cow position: | chr2:1959315-1959634 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 2-328 |
| Cow position: | chr2:60932251-60931928 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 20, 208 |
| Conread position: | 2-345 |
| Cow position: | chr2:16415140-16414789 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 99 |
| Conread position: | 2-373 |
| Cow position: | chr2:11705664-11705286 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 176 |
| Conread position: | 2-375 |
| Cow position: | chr2:8734676-8735056 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 2-513 |
| Cow position: | chr2:26873630-26873116 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 19 |
| Conread position: | 2-530 |
| Cow position: | chr2:14556714-14557243 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 355 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 2-531 |
| Cow position: | chr2:74389925-74390443 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 66 |
| Conread position: | 2-534 |
| Cow position: | chr2:34739402-34739956 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 142 |
| Conread position: | 2-535 |
| Cow position: | chr2:4672940-4673461 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 2-536 |
| Cow position: | chr2:4725984-4725451 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 86 |
| Conread position: | 2-536 |
| Cow position: | chr2:46272201-46272735 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 2-536 |
| Cow position: | chr2:62039041-62039548 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 51 |
| Conread position: | 3-191 |
| Cow position: | chr2:31417960-31417770 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 18, 47 |
| Conread position: | 3-303 |
| Cow position: | chr2:40772941-40772628 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 3-313 |
| Cow position: | chr2:51518103-51518423 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 3-523 |
| Cow position: | chr2:44616595-44616062 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 90 |
| Conread position: | 3-536 |
| Cow position: | chr2:11735757-11735215 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 115 |
| Conread position: | 3-536 |
| Cow position: | chr2:12330945-12330417 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 112 |
| Conread position: | 3-536 |
| Cow position: | chr2:56205831-56206375 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 122 |
| Conread position: | 3-536 |
| Cow position: | chr2:58978112-58977561 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 73 |
| Conread position: | 3-537 |
| Cow position: | chr2:37451131-37451651 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 128 |
| Conread position: | 4-196 |
| Cow position: | chr2:30187716-30187909 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 17, 49 |
| Conread position: | 4-379 |
| Cow position: | chr2:35463718-35463339 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 4-535 |
| Cow position: | chr2:40540553-40540003 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 317 |
| Conread position: | 5-536 |
| Cow position: | chr2:30924483-30923944 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 89 |
| Conread position: | 6-225 |
| Cow position: | chr2:38831303-38831512 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 9, 55 |
| Conread position: | 7-339 |
| Cow position: | chr2:17826698-17826367 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 91 |
| Conread position: | 16-259 |
| Cow position: | chr2:62502015-62502260 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 26 |
| Conread position: | 16-345 |
| Cow position: | chr2:37873815-37873511 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 17-354 |
| Cow position: | chr2:50418013-50417674 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 161 |
| Conread position: | 20-537 |
| Cow position: | chr2:77468204-77468709 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 63 |
| Conread position: | 28-460 |
| Cow position: | chr2:295000-295439 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 159 |
| Conread position: | 30-536 |
| Cow position: | chr2:35303437-35302935 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 99 |
| Conread position: | 32-495 |
| Cow position: | chr2:31488370-31487890 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 451 |
| Conread position: | 38-530 |
| Cow position: | chr2:6291886-6291404 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 177 |
| Conread position: | 45-537 |
| Cow position: | chr2:16331172-16330673 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 62 |
| Conread position: | 49-337 |
| Cow position: | chr2:70708787-70709072 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 85, 45 |
| Conread position: | 55-444 |
| Cow position: | chr2:39918701-39919084 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 51 |
| Conread position: | 57-265 |
| Cow position: | chr2:48749802-48750015 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 148 |
| Conread position: | 60-357 |
| Cow position: | chr2:46452837-46453125 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 154, 84 |
| Conread position: | 73-345 |
| Cow position: | chr2:35440880-35440608 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 232 |
| Conread position: | 76-472 |
| Cow position: | chr2:22306331-22306739 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 49 |
| Conread position: | 78-387 |
| Cow position: | chr2:13861524-13861842 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 46, 265 |
| Conread position: | 91-536 |
| Cow position: | chr2:49633690-49633252 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 111 |
| Conread position: | 100-432 |
| Cow position: | chr2:54797801-54798130 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 114-322 |
| Cow position: | chr2:38381343-38381125 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 144-536 |
| Cow position: | chr2:54346985-54346595 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 23, 10 |
Show alignments to all cow chromosomes.