Cow genome map
| Conread name: | rfat0139_b21.y1 |
| Conread position: | 1-275 |
| Cow position: | chr21:36981665-36981375 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 1-464 |
| Cow position: | chr21:23801787-23802252 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 20 |
| Conread position: | 1-486 |
| Cow position: | chr21:4098225-4097735 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 59 |
| Conread position: | 1-510 |
| Cow position: | chr21:5596442-5595951 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 141 |
| Conread position: | 1-512 |
| Cow position: | chr21:38944573-38945071 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 1-536 |
| Cow position: | chr21:25813763-25814286 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 131 |
| Conread position: | 2-245 |
| Cow position: | chr21:6365523-6365284 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 56 |
| Conread position: | 2-334 |
| Cow position: | chr21:12571469-12571136 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 193 |
| Conread position: | 2-339 |
| Cow position: | chr21:21000730-21001074 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 3-199 |
| Cow position: | chr21:13437750-13437552 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 3-354 |
| Cow position: | chr21:20910781-20911134 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 133 |
| Conread position: | 4-190 |
| Cow position: | chr21:21411946-21412128 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 17, 97 |
| Conread position: | 4-473 |
| Cow position: | chr21:32829781-32830263 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 24 |
| Conread position: | 4-536 |
| Cow position: | chr21:49647322-49647856 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 57 |
| Conread position: | 5-330 |
| Cow position: | chr21:34591840-34592154 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 21, 127 |
| Conread position: | 5-444 |
| Cow position: | chr21:649032-649480 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 10-536 |
| Cow position: | chr21:23548624-23549146 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 78 |
| Conread position: | 21-343 |
| Cow position: | chr21:37344019-37344348 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 287 |
| Conread position: | 21-536 |
| Cow position: | chr21:29253562-29254091 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 200 |
| Conread position: | 24-536 |
| Cow position: | chr21:26564741-26565263 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 322 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 16, 43 |
| Conread position: | 30-217 |
| Cow position: | chr21:580797-580983 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 31-380 |
| Cow position: | chr21:36711222-36710874 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 202 |
| Conread position: | 33-179 |
| Cow position: | chr21:30858561-30858414 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 34-477 |
| Cow position: | chr21:34142112-34142538 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 43-278 |
| Cow position: | chr21:44640527-44640290 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 208, 94 |
| Conread position: | 53-536 |
| Cow position: | chr21:26830873-26830392 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 246 |
| Conread position: | 65-378 |
| Cow position: | chr21:37353071-37353367 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 275, 55 |
| Conread position: | 77-537 |
| Cow position: | chr21:26699093-26699560 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 64 |
| Conread position: | 82-534 |
| Cow position: | chr21:22944379-22943928 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 292 |
| Conread position: | 85-502 |
| Cow position: | chr21:26615319-26615730 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 73 |
| Conread position: | 99-530 |
| Cow position: | chr21:28056854-28056427 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 99-530 |
| Cow position: | chr21:28730186-28729751 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 139-341 |
| Cow position: | chr21:8419563-8419362 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 142-524 |
| Cow position: | chr21:25603976-25604359 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 28 |
| Conread position: | 208-537 |
| Cow position: | chr21:16899732-16899397 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 39 |
Show alignments to all cow chromosomes.