Cow genome map


           Conread name:
           rfat0139_b21.y1
        

               Conread position:
               2-212
               

               Cow position:
               chr26:5552281-5552068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               24, 41
               

               Conread position:
               2-260
               

               Cow position:
               chr26:16905434-16905167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               2-280
               

               Cow position:
               chr26:11266224-11265950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               197
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               19, 199
               

               Conread position:
               2-328
               

               Cow position:
               chr26:22621725-22621392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               19, 40
               

               Conread position:
               2-331
               

               Cow position:
               chr26:9063601-9063269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               19, 57
               

               Conread position:
               2-361
               

               Cow position:
               chr26:7307500-7307143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               251
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               34, 19
               

               Conread position:
               2-375
               

               Cow position:
               chr26:6082609-6083006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 64
               

               Conread position:
               2-452
               

               Cow position:
               chr26:27432220-27432679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 168
               

               Conread position:
               2-526
               

               Cow position:
               chr26:9837925-9838451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               540
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 268
               

               Conread position:
               2-528
               

               Cow position:
               chr26:21012633-21012116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 39
               

               Conread position:
               2-536
               

               Cow position:
               chr26:25340421-25340949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               542
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 182
               

               Conread position:
               3-179
               

               Cow position:
               chr26:11329332-11329164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               18, 53
               

               Conread position:
               3-534
               

               Cow position:
               chr26:15892491-15891953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               18, 115
               

               Conread position:
               4-205
               

               Cow position:
               chr26:1600653-1600862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               22, 77
               

               Conread position:
               4-536
               

               Cow position:
               chr26:2604410-2604959 (view UCSC Genome Browser custom track)
               

               Alignm length:
               560
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 217
               

               Conread position:
               31-536
               

               Cow position:
               chr26:30625127-30625636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               519
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               103, 96
               

               Conread position:
               32-279
               

               Cow position:
               chr26:28422964-28423213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               92, 53
               

               Conread position:
               107-454
               

               Cow position:
               chr26:3371813-3371458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               22, 334
               

               Conread position:
               161-453
               

               Cow position:
               chr26:1614480-1614180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               211
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               89, 125
               
Show alignments to all cow chromosomes.