Cow genome map
| Conread name: | rfat0139_b21.y1 |
| Conread position: | 1-378 |
| Cow position: | chr28:13725450-13725069 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 264 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 20, 54 |
| Conread position: | 1-446 |
| Cow position: | chr28:4817285-4816841 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 56 |
| Conread position: | 2-310 |
| Cow position: | chr28:15973326-15973635 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 12, 154 |
| Conread position: | 2-317 |
| Cow position: | chr28:34878932-34879244 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 19, 91 |
| Conread position: | 2-323 |
| Cow position: | chr28:2222847-2223176 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 290 |
| Conread position: | 2-359 |
| Cow position: | chr28:17190160-17189814 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 23, 150 |
| Conread position: | 2-426 |
| Cow position: | chr28:758268-758716 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 35 |
| Conread position: | 2-527 |
| Cow position: | chr28:29473509-29472973 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 99 |
| Conread position: | 2-534 |
| Cow position: | chr28:4457848-4457301 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 64 |
| Conread position: | 2-535 |
| Cow position: | chr28:7021110-7021643 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 2-535 |
| Cow position: | chr28:17599467-17600011 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 413 |
| Conread position: | 2-536 |
| Cow position: | chr28:8717435-8717979 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 60 |
| Conread position: | 3-345 |
| Cow position: | chr28:4375905-4376245 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 54 |
| Conread position: | 3-375 |
| Cow position: | chr28:5117418-5117040 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 109 |
| Conread position: | 3-531 |
| Cow position: | chr28:15351607-15352138 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 197 |
| Conread position: | 3-536 |
| Cow position: | chr28:6230179-6230717 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 106 |
| Conread position: | 4-377 |
| Cow position: | chr28:28635619-28635241 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 8 |
| Conread position: | 4-392 |
| Cow position: | chr28:15518749-15519136 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 61 |
| Conread position: | 4-495 |
| Cow position: | chr28:18145216-18145686 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 328 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 22, 139 |
| Conread position: | 4-496 |
| Cow position: | chr28:25847517-25847038 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 155 |
| Conread position: | 4-535 |
| Cow position: | chr28:2428502-2429050 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 69 |
| Conread position: | 4-536 |
| Cow position: | chr28:23467424-23466892 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 5-194 |
| Cow position: | chr28:30369506-30369318 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 16, 79 |
| Conread position: | 7-515 |
| Cow position: | chr28:23675326-23674810 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 194 |
| Conread position: | 8-534 |
| Cow position: | chr28:30966713-30966185 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 87 |
| Conread position: | 11-537 |
| Cow position: | chr28:24620355-24620871 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 189 |
| Conread position: | 12-373 |
| Cow position: | chr28:3462394-3462025 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 89 |
| Conread position: | 21-354 |
| Cow position: | chr28:11924569-11924891 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 220, 63 |
| Conread position: | 25-536 |
| Cow position: | chr28:12701140-12700624 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 64 |
| Conread position: | 25-537 |
| Cow position: | chr28:15004740-15004237 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 64 |
| Conread position: | 28-536 |
| Cow position: | chr28:16041187-16041678 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 85 |
| Conread position: | 44-380 |
| Cow position: | chr28:17762114-17761772 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 165, 247 |
| Conread position: | 52-397 |
| Cow position: | chr28:27936552-27936886 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 142 |
| Conread position: | 52-532 |
| Cow position: | chr28:28442196-28441717 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 9 |
| Conread position: | 53-368 |
| Cow position: | chr28:15736486-15736807 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 78, 29 |
| Conread position: | 73-378 |
| Cow position: | chr28:15935444-15935744 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 176, 39 |
| Conread position: | 83-391 |
| Cow position: | chr28:23025808-23025495 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 98-354 |
| Cow position: | chr28:34200623-34200876 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 102-457 |
| Cow position: | chr28:6506863-6506502 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 70 |
| Conread position: | 133-536 |
| Cow position: | chr28:7654247-7654644 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 109 |
Show alignments to all cow chromosomes.