Cow genome map
| Conread name: | rfat0139_b21.y1 |
| Conread position: | 2-223 |
| Cow position: | chr29:10842002-10842224 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 19, 35 |
| Conread position: | 2-235 |
| Cow position: | chr29:2484640-2484875 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 141 |
| Conread position: | 2-264 |
| Cow position: | chr29:14837783-14838050 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 23, 234 |
| Conread position: | 2-293 |
| Cow position: | chr29:40040876-40041151 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 86, 51 |
| Conread position: | 2-313 |
| Cow position: | chr29:133461-133147 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 19, 182 |
| Conread position: | 2-492 |
| Cow position: | chr29:11786492-11785993 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 155 |
| Conread position: | 2-534 |
| Cow position: | chr29:2298830-2299369 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 256 |
| Conread position: | 2-536 |
| Cow position: | chr29:7748224-7748755 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 82 |
| Conread position: | 2-536 |
| Cow position: | chr29:10643926-10644466 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 145 |
| Conread position: | 2-536 |
| Cow position: | chr29:16615033-16615583 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 362 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 2-537 |
| Cow position: | chr29:8891764-8892305 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 89 |
| Conread position: | 3-332 |
| Cow position: | chr29:24669223-24668884 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 235 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 18, 145 |
| Conread position: | 3-354 |
| Cow position: | chr29:32806549-32806198 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 247 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 19, 126 |
| Conread position: | 3-360 |
| Cow position: | chr29:17342306-17342652 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 218 |
| Conread position: | 3-478 |
| Cow position: | chr29:137848-137370 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 195 |
| Conread position: | 3-534 |
| Cow position: | chr29:13027704-13027169 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 105 |
| Conread position: | 12-536 |
| Cow position: | chr29:21546266-21546798 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 98 |
| Conread position: | 20-276 |
| Cow position: | chr29:43517511-43517768 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 114, 13 |
| Conread position: | 20-380 |
| Cow position: | chr29:6871813-6872171 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 16, 136 |
| Conread position: | 28-443 |
| Cow position: | chr29:38247523-38247938 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 105, 73 |
| Conread position: | 38-402 |
| Cow position: | chr29:11526482-11526839 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 95, 124 |
| Conread position: | 42-537 |
| Cow position: | chr29:29599742-29600231 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 187 |
| Conread position: | 61-438 |
| Cow position: | chr29:4260598-4260219 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 264 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 79, 111 |
| Conread position: | 62-368 |
| Cow position: | chr29:4366586-4366281 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 95, 11 |
| Conread position: | 63-536 |
| Cow position: | chr29:18522999-18523483 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 10 |
| Conread position: | 76-536 |
| Cow position: | chr29:1576580-1577029 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 78-374 |
| Cow position: | chr29:5977908-5978209 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 139-535 |
| Cow position: | chr29:32894063-32893675 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 111, 77 |
| Conread position: | 141-536 |
| Cow position: | chr29:22285398-22284997 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 121, 10 |
| Conread position: | 144-537 |
| Cow position: | chr29:13611515-13611908 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 62, 146 |
| Conread position: | 158-462 |
| Cow position: | chr29:45521041-45520732 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 90, 56 |
Show alignments to all cow chromosomes.