Cow genome map
| Conread name: | rfat0139_b21.y1 |
| Conread position: | 1-329 |
| Cow position: | chr3:33469262-33469576 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 166 |
| Conread position: | 1-536 |
| Cow position: | chr3:56101655-56101136 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 191 |
| Conread position: | 2-191 |
| Cow position: | chr3:56099612-56099798 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 2-193 |
| Cow position: | chr3:32840040-32840233 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-225 |
| Cow position: | chr3:35030374-35030600 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 2-251 |
| Cow position: | chr3:57900333-57900083 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 156 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 2-277 |
| Cow position: | chr3:45863533-45863800 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 19, 111 |
| Conread position: | 2-277 |
| Cow position: | chr3:55454660-55454943 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-303 |
| Cow position: | chr3:15747171-15747466 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 2-336 |
| Cow position: | chr3:54347006-54347343 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 114 |
| Conread position: | 2-339 |
| Cow position: | chr3:24275974-24275628 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-358 |
| Cow position: | chr3:55461261-55461621 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 2-373 |
| Cow position: | chr3:38255039-38254671 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 29 |
| Conread position: | 2-378 |
| Cow position: | chr3:16114809-16114425 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 143 |
| Conread position: | 2-391 |
| Cow position: | chr3:2627558-2627189 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 276 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 132, 57 |
| Conread position: | 2-489 |
| Cow position: | chr3:38497195-38496697 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 58 |
| Conread position: | 2-490 |
| Cow position: | chr3:78520450-78519952 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 207 |
| Conread position: | 2-528 |
| Cow position: | chr3:15570832-15570311 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 119 |
| Conread position: | 2-531 |
| Cow position: | chr3:17056666-17057188 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 2-531 |
| Cow position: | chr3:21026008-21026536 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 86 |
| Conread position: | 2-531 |
| Cow position: | chr3:63202640-63202112 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 56 |
| Conread position: | 2-533 |
| Cow position: | chr3:7245703-7246242 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 485 |
| Conread position: | 2-535 |
| Cow position: | chr3:26532603-26533135 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 61 |
| Conread position: | 2-536 |
| Cow position: | chr3:38252236-38251709 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 86 |
| Conread position: | 2-536 |
| Cow position: | chr3:42993468-42994012 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 59 |
| Conread position: | 2-536 |
| Cow position: | chr3:63219332-63218813 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 76 |
| Conread position: | 2-536 |
| Cow position: | chr3:69421088-69421606 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 82 |
| Conread position: | 2-537 |
| Cow position: | chr3:52690142-52689611 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 3-192 |
| Cow position: | chr3:73811472-73811285 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 3-239 |
| Cow position: | chr3:6828588-6828356 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 18, 54 |
| Conread position: | 3-251 |
| Cow position: | chr3:22220541-22220294 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 131, 232 |
| Conread position: | 3-316 |
| Cow position: | chr3:39214778-39214454 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 3-371 |
| Cow position: | chr3:80477689-80478042 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 18, 53 |
| Conread position: | 3-495 |
| Cow position: | chr3:37015629-37015136 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 82 |
| Conread position: | 3-533 |
| Cow position: | chr3:19108959-19108426 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 75 |
| Conread position: | 3-534 |
| Cow position: | chr3:61677936-61677399 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 72 |
| Conread position: | 3-535 |
| Cow position: | chr3:18352967-18353501 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 178 |
| Conread position: | 3-536 |
| Cow position: | chr3:24585830-24586370 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 3-536 |
| Cow position: | chr3:39555191-39555728 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 4-506 |
| Cow position: | chr3:22867569-22868077 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 4-536 |
| Cow position: | chr3:12254441-12253906 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 113 |
| Conread position: | 5-351 |
| Cow position: | chr3:3791005-3790670 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 247 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 10-534 |
| Cow position: | chr3:6865053-6864528 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 438 |
| Conread position: | 11-494 |
| Cow position: | chr3:45691657-45692137 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 90 |
| Conread position: | 13-298 |
| Cow position: | chr3:37451493-37451200 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 8, 144 |
| Conread position: | 13-300 |
| Cow position: | chr3:58129483-58129188 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 21-222 |
| Cow position: | chr3:40615774-40615973 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 112, 125 |
| Conread position: | 21-330 |
| Cow position: | chr3:73416381-73416065 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 28-344 |
| Cow position: | chr3:40686884-40686574 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 56 |
| Conread position: | 28-536 |
| Cow position: | chr3:76187914-76187391 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 127 |
| Conread position: | 32-368 |
| Cow position: | chr3:31810670-31810331 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 33 |
| Conread position: | 32-380 |
| Cow position: | chr3:56124912-56124563 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 41 |
| Conread position: | 35-501 |
| Cow position: | chr3:79978819-79979294 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 25 |
| Conread position: | 36-530 |
| Cow position: | chr3:79316617-79316121 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 252 |
| Conread position: | 44-225 |
| Cow position: | chr3:58078516-58078692 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 51-536 |
| Cow position: | chr3:72105326-72105803 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 79 |
| Conread position: | 59-537 |
| Cow position: | chr3:19126622-19126131 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 433 |
| Conread position: | 61-534 |
| Cow position: | chr3:50111684-50112160 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 417 |
| Conread position: | 63-260 |
| Cow position: | chr3:64678770-64678575 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 66-453 |
| Cow position: | chr3:46135729-46136133 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 70 |
| Conread position: | 74-536 |
| Cow position: | chr3:74849817-74850286 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 148 |
| Conread position: | 100-534 |
| Cow position: | chr3:63000078-63000497 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 294 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 107-360 |
| Cow position: | chr3:28928560-28928819 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 108-498 |
| Cow position: | chr3:6854331-6854721 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 169-366 |
| Cow position: | chr3:58211745-58211546 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 76, 130 |
| Conread position: | 171-427 |
| Cow position: | chr3:6665647-6665376 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
Show alignments to all cow chromosomes.