Cow genome map
| Conread name: | rfat0139_b21.y1 |
| Conread position: | 1-174 |
| Cow position: | chr5:19561397-19561577 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 20, 163 |
| Conread position: | 1-295 |
| Cow position: | chr5:3551399-3551695 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 20, 124 |
| Conread position: | 1-316 |
| Cow position: | chr5:24221303-24220985 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 1-535 |
| Cow position: | chr5:48225270-48225807 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 83 |
| Conread position: | 1-536 |
| Cow position: | chr5:27691289-27690760 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 93 |
| Conread position: | 1-536 |
| Cow position: | chr5:59771356-59770811 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 57 |
| Conread position: | 2-181 |
| Cow position: | chr5:55985955-55985775 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 149 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 16, 81 |
| Conread position: | 2-187 |
| Cow position: | chr5:60185984-60185798 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 126 |
| Conread position: | 2-212 |
| Cow position: | chr5:42044155-42043945 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 104 |
| Conread position: | 2-295 |
| Cow position: | chr5:49127015-49126717 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 63, 102 |
| Conread position: | 2-335 |
| Cow position: | chr5:40270536-40270871 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 141 |
| Conread position: | 2-337 |
| Cow position: | chr5:54693802-54694126 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 19, 64 |
| Conread position: | 2-380 |
| Cow position: | chr5:23648122-23648503 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 84 |
| Conread position: | 2-496 |
| Cow position: | chr5:51859020-51859498 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 329 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 23, 134 |
| Conread position: | 2-502 |
| Cow position: | chr5:23666888-23667384 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 61 |
| Conread position: | 2-535 |
| Cow position: | chr5:57363490-57364016 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 105 |
| Conread position: | 2-536 |
| Cow position: | chr5:6190187-6189662 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 68 |
| Conread position: | 2-536 |
| Cow position: | chr5:55832532-55833077 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 48 |
| Conread position: | 2-537 |
| Cow position: | chr5:10853526-10854064 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 314 |
| Conread position: | 2-537 |
| Cow position: | chr5:54622921-54622383 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 3-238 |
| Cow position: | chr5:50063846-50063615 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 18, 99 |
| Conread position: | 3-430 |
| Cow position: | chr5:25920480-25920904 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 152 |
| Conread position: | 3-512 |
| Cow position: | chr5:22857326-22857844 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 192 |
| Conread position: | 3-536 |
| Cow position: | chr5:49490280-49489765 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 350 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 3-536 |
| Cow position: | chr5:52605317-52605859 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 117 |
| Conread position: | 3-536 |
| Cow position: | chr5:64844961-64845497 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 104 |
| Conread position: | 4-232 |
| Cow position: | chr5:61231146-61231375 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 17, 53 |
| Conread position: | 4-330 |
| Cow position: | chr5:38738326-38738002 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 55 |
| Conread position: | 4-530 |
| Cow position: | chr5:11956196-11956714 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 111 |
| Conread position: | 4-536 |
| Cow position: | chr5:49565870-49565342 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 5-322 |
| Cow position: | chr5:57613764-57614080 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 18, 54 |
| Conread position: | 5-537 |
| Cow position: | chr5:26058425-26057892 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 123 |
| Conread position: | 12-321 |
| Cow position: | chr5:21557292-21557604 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 13, 101 |
| Conread position: | 12-499 |
| Cow position: | chr5:5682211-5682710 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 48 |
| Conread position: | 12-536 |
| Cow position: | chr5:35446332-35446852 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 90 |
| Conread position: | 13-361 |
| Cow position: | chr5:52611256-52611615 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 8, 133 |
| Conread position: | 20-466 |
| Cow position: | chr5:47871819-47872273 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 24-212 |
| Cow position: | chr5:30360149-30360334 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 21, 33 |
| Conread position: | 25-232 |
| Cow position: | chr5:35579807-35579600 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 108, 179 |
| Conread position: | 25-450 |
| Cow position: | chr5:49912288-49911858 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 93 |
| Conread position: | 27-374 |
| Cow position: | chr5:34471669-34472010 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 26 |
| Conread position: | 57-300 |
| Cow position: | chr5:66278683-66278447 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 8, 29 |
| Conread position: | 59-260 |
| Cow position: | chr5:40357692-40357898 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 61-534 |
| Cow position: | chr5:1230051-1229572 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 62-536 |
| Cow position: | chr5:55684111-55683631 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 14 |
| Conread position: | 73-536 |
| Cow position: | chr5:70402115-70401649 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 82-536 |
| Cow position: | chr5:25901252-25901702 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 112-499 |
| Cow position: | chr5:62758944-62759336 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 26 |
| Conread position: | 132-520 |
| Cow position: | chr5:34196734-34196349 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 54 |
Show alignments to all cow chromosomes.