Cow genome map
| Conread name: | rfat0139_b21.y1 |
| Conread position: | 1-211 |
| Cow position: | chr6:58951032-58951243 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 20, 120 |
| Conread position: | 1-239 |
| Cow position: | chr6:27942275-27942037 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 20, 60 |
| Conread position: | 1-380 |
| Cow position: | chr6:13591758-13591374 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 42 |
| Conread position: | 1-512 |
| Cow position: | chr6:27534340-27534876 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 494 |
| Conread position: | 1-536 |
| Cow position: | chr6:58880644-58880118 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 56 |
| Conread position: | 1-536 |
| Cow position: | chr6:64888414-64887882 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 63 |
| Conread position: | 2-192 |
| Cow position: | chr6:57473708-57473515 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-283 |
| Cow position: | chr6:9322447-9322162 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 248, 180 |
| Conread position: | 2-325 |
| Cow position: | chr6:45793177-45792851 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 235 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 2-332 |
| Cow position: | chr6:40031482-40031163 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 55 |
| Conread position: | 2-368 |
| Cow position: | chr6:27365618-27365252 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 126 |
| Conread position: | 2-380 |
| Cow position: | chr6:16410501-16410121 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 255 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 23, 56 |
| Conread position: | 2-380 |
| Cow position: | chr6:52240384-52240769 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 306 |
| Conread position: | 2-427 |
| Cow position: | chr6:26654557-26654125 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 64 |
| Conread position: | 2-428 |
| Cow position: | chr6:19441652-19441216 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 2-440 |
| Cow position: | chr6:15962478-15962920 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 82 |
| Conread position: | 2-486 |
| Cow position: | chr6:2087970-2087474 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 2-505 |
| Cow position: | chr6:50624876-50624362 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 19 |
| Conread position: | 2-509 |
| Cow position: | chr6:44494646-44494143 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 19 |
| Conread position: | 2-516 |
| Cow position: | chr6:5130024-5130524 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 125 |
| Conread position: | 2-527 |
| Cow position: | chr6:50637715-50637197 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 111 |
| Conread position: | 2-534 |
| Cow position: | chr6:10236639-10236103 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 98 |
| Conread position: | 2-535 |
| Cow position: | chr6:59596692-59596166 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 354 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 19, 158 |
| Conread position: | 2-536 |
| Cow position: | chr6:10650348-10650880 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 8 |
| Conread position: | 2-536 |
| Cow position: | chr6:30076829-30077379 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 485 |
| Conread position: | 2-536 |
| Cow position: | chr6:55474753-55474210 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 464 |
| Conread position: | 2-536 |
| Cow position: | chr6:55944982-55945522 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 93 |
| Conread position: | 2-537 |
| Cow position: | chr6:41677375-41676837 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 116 |
| Conread position: | 3-419 |
| Cow position: | chr6:15471367-15471791 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 3-450 |
| Cow position: | chr6:59507654-59507227 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 295 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 3-535 |
| Cow position: | chr6:4903555-4904080 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 163 |
| Conread position: | 4-189 |
| Cow position: | chr6:32419720-32419528 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 4-196 |
| Cow position: | chr6:67256960-67256772 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 12, 114 |
| Conread position: | 4-212 |
| Cow position: | chr6:6079603-6079808 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 130, 19 |
| Conread position: | 4-212 |
| Cow position: | chr6:66751214-66751011 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 23, 81 |
| Conread position: | 5-380 |
| Cow position: | chr6:10695165-10694774 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 55 |
| Conread position: | 7-357 |
| Cow position: | chr6:67098663-67098318 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 110 |
| Conread position: | 9-194 |
| Cow position: | chr6:22663653-22663835 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 12, 118 |
| Conread position: | 10-516 |
| Cow position: | chr6:41556763-41556258 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 133 |
| Conread position: | 12-533 |
| Cow position: | chr6:68826428-68826942 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 337 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 13, 89 |
| Conread position: | 20-293 |
| Cow position: | chr6:44510515-44510239 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 13, 89 |
| Conread position: | 24-532 |
| Cow position: | chr6:62414731-62414212 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 284 |
| Conread position: | 24-536 |
| Cow position: | chr6:30316521-30317040 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 100 |
| Conread position: | 25-537 |
| Cow position: | chr6:62000921-62001447 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 69 |
| Conread position: | 31-372 |
| Cow position: | chr6:52557234-52557563 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 116, 124 |
| Conread position: | 31-510 |
| Cow position: | chr6:29283688-29283200 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 324 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 187, 69 |
| Conread position: | 32-260 |
| Cow position: | chr6:17344615-17344385 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 33-199 |
| Cow position: | chr6:50502991-50502826 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 85, 95 |
| Conread position: | 34-309 |
| Cow position: | chr6:66839795-66839521 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 36-536 |
| Cow position: | chr6:44950046-44950557 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 454 |
| Conread position: | 57-345 |
| Cow position: | chr6:64252501-64252212 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 62-537 |
| Cow position: | chr6:10570503-10570992 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 145 |
| Conread position: | 75-518 |
| Cow position: | chr6:49815567-49815112 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 88-519 |
| Cow position: | chr6:32427510-32427079 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 139 |
| Conread position: | 94-320 |
| Cow position: | chr6:12738821-12738590 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.