Cow genome map

Conread name: rfat0139_b21.y1

Conread position: 1-185
Cow position: chr7:44544784-44544962 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 84

Conread position: 1-380
Cow position: chr7:58644037-58643654 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 33

Conread position: 1-514
Cow position: chr7:48024889-48024383 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 349
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 24, 14

Conread position: 1-530
Cow position: chr7:63135369-63134847 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 343
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 20, 83

Conread position: 2-181
Cow position: chr7:48762628-48762809 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 2-254
Cow position: chr7:66319087-66318832 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 141

Conread position: 2-277
Cow position: chr7:13821827-13821548 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 201
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 19, 42

Conread position: 2-279
Cow position: chr7:52448626-52448907 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 203
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 19, 82

Conread position: 2-319
Cow position: chr7:37190205-37189881 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 210
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 23, 207

Conread position: 2-323
Cow position: chr7:40203533-40203205 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 216
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 16, 207

Conread position: 2-410
Cow position: chr7:33962844-33963264 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 131

Conread position: 2-530
Cow position: chr7:38145342-38145869 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 123

Conread position: 2-534
Cow position: chr7:60741403-60741942 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 484

Conread position: 2-534
Cow position: chr7:60757676-60758197 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 68

Conread position: 2-535
Cow position: chr7:56822183-56822712 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 458

Conread position: 2-536
Cow position: chr7:36472491-36471966 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 57

Conread position: 2-536
Cow position: chr7:52801071-52801607 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 297

Conread position: 3-308
Cow position: chr7:22632978-22633290 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 208

Conread position: 3-345
Cow position: chr7:5436487-5436826 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 240
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 18, 158

Conread position: 3-373
Cow position: chr7:20225752-20226118 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 20

Conread position: 3-380
Cow position: chr7:22879565-22879187 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 261
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 131, 18

Conread position: 3-380
Cow position: chr7:31638066-31637682 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 244
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 18, 91

Conread position: 3-383
Cow position: chr7:69132797-69132423 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 266
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 131, 18

Conread position: 3-495
Cow position: chr7:36096576-36096090 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 397

Conread position: 3-523
Cow position: chr7:39419598-39420106 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 193

Conread position: 3-526
Cow position: chr7:61772340-61772892 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 202

Conread position: 4-537
Cow position: chr7:48814655-48814113 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 248

Conread position: 5-317
Cow position: chr7:68263815-68263504 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 154

Conread position: 5-322
Cow position: chr7:49070097-49070424 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 222
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 16, 151

Conread position: 5-532
Cow position: chr7:3949943-3949423 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 78

Conread position: 5-536
Cow position: chr7:26465290-26464793 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 130

Conread position: 5-536
Cow position: chr7:34082965-34082427 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 280

Conread position: 6-390
Cow position: chr7:17223726-17224113 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 254
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 19, 51

Conread position: 7-354
Cow position: chr7:65387286-65387653 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 253
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 139, 315

Conread position: 7-389
Cow position: chr7:54482744-54483125 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 254
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 14, 47

Conread position: 13-477
Cow position: chr7:10450737-10451205 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 47

Conread position: 21-327
Cow position: chr7:36128284-36127973 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 222
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 113, 199

Conread position: 24-532
Cow position: chr7:20829532-20829023 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 7

Conread position: 27-467
Cow position: chr7:63548415-63548856 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 168

Conread position: 28-167
Cow position: chr7:34218961-34219099 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 31-536
Cow position: chr7:51406959-51406453 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 108

Conread position: 36-506
Cow position: chr7:99073-99550 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 105

Conread position: 41-381
Cow position: chr7:42814330-42813989 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 12

Conread position: 43-514
Cow position: chr7:32437817-32438284 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 319
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 29, 222

Conread position: 44-519
Cow position: chr7:10036380-10035913 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 44

Conread position: 52-485
Cow position: chr7:58547835-58548266 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 169

Conread position: 59-536
Cow position: chr7:14865732-14865268 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 78

Conread position: 79-380
Cow position: chr7:19605110-19605413 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 212
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 98, 59

Conread position: 80-537
Cow position: chr7:61424070-61424540 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 138

Conread position: 81-438
Cow position: chr7:2578160-2577794 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 121

Conread position: 89-534
Cow position: chr7:998641-998189 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 132

Conread position: 93-492
Cow position: chr7:33063398-33063791 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 72

Conread position: 96-536
Cow position: chr7:7284380-7283960 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 292
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 94, 30

Conread position: 96-536
Cow position: chr7:59141656-59141213 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 218

Conread position: 97-534
Cow position: chr7:53404831-53404393 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 160

Conread position: 139-510
Cow position: chr7:49403159-49403532 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 82

Conread position: 187-536
Cow position: chr7:22341924-22342275 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 118

Show alignments to all cow chromosomes.