Cow genome map
| Conread name: | rfat0139_b21.y1 |
| Conread position: | 1-256 |
| Cow position: | chrX:6766450-6766706 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 20, 177 |
| Conread position: | 1-296 |
| Cow position: | chrX:15993730-15993428 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 12, 200 |
| Conread position: | 1-374 |
| Cow position: | chrX:24309822-24310195 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 21 |
| Conread position: | 1-391 |
| Cow position: | chrX:38852445-38852050 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 1-391 |
| Cow position: | chrX:44018987-44018594 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 29, 264 |
| Conread position: | 1-438 |
| Cow position: | chrX:17663633-17664078 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 45 |
| Conread position: | 1-518 |
| Cow position: | chrX:25848086-25847580 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 1-537 |
| Cow position: | chrX:18247638-18247097 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 83 |
| Conread position: | 2-194 |
| Cow position: | chrX:4408835-4408647 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 129, 20 |
| Conread position: | 2-198 |
| Cow position: | chrX:30354668-30354480 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 19, 90 |
| Conread position: | 2-212 |
| Cow position: | chrX:150755-150544 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 123 |
| Conread position: | 2-260 |
| Cow position: | chrX:10301412-10301153 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 19, 66 |
| Conread position: | 2-306 |
| Cow position: | chrX:18455486-18455796 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 19, 307 |
| Conread position: | 2-322 |
| Cow position: | chrX:2649066-2649393 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 20, 76 |
| Conread position: | 2-359 |
| Cow position: | chrX:1527684-1528031 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 112 |
| Conread position: | 2-523 |
| Cow position: | chrX:17158835-17159365 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 114 |
| Conread position: | 2-531 |
| Cow position: | chrX:28133380-28132846 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 2-536 |
| Cow position: | chrX:17610171-17610712 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 304 |
| Conread position: | 2-536 |
| Cow position: | chrX:27071128-27070575 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 2-537 |
| Cow position: | chrX:20652699-20652159 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 185 |
| Conread position: | 2-537 |
| Cow position: | chrX:23218353-23217817 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 100 |
| Conread position: | 2-537 |
| Cow position: | chrX:25282209-25282755 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 323 |
| Conread position: | 3-313 |
| Cow position: | chrX:3144911-3144596 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 18, 39 |
| Conread position: | 3-380 |
| Cow position: | chrX:7809715-7810095 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 129 |
| Conread position: | 3-380 |
| Cow position: | chrX:27629137-27628734 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 3-537 |
| Cow position: | chrX:5649120-5649650 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 142 |
| Conread position: | 4-330 |
| Cow position: | chrX:25405089-25405425 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 4-487 |
| Cow position: | chrX:40496304-40496787 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 5-199 |
| Cow position: | chrX:25204617-25204421 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 6-352 |
| Cow position: | chrX:28523387-28523718 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 15, 133 |
| Conread position: | 6-374 |
| Cow position: | chrX:3155305-3155676 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 10-324 |
| Cow position: | chrX:2705075-2705396 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 74 |
| Conread position: | 10-380 |
| Cow position: | chrX:20792412-20792040 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 88 |
| Conread position: | 20-536 |
| Cow position: | chrX:6044203-6044712 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 60 |
| Conread position: | 21-260 |
| Cow position: | chrX:3396744-3396981 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 124, 143 |
| Conread position: | 24-536 |
| Cow position: | chrX:4414125-4413619 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 176 |
| Conread position: | 25-196 |
| Cow position: | chrX:12640628-12640459 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 25-536 |
| Cow position: | chrX:4326422-4326949 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 427 |
| Conread position: | 25-536 |
| Cow position: | chrX:20733834-20733313 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 96 |
| Conread position: | 37-532 |
| Cow position: | chrX:3582187-3581679 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 45 |
| Conread position: | 46-422 |
| Cow position: | chrX:4063021-4063383 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 42 |
| Conread position: | 55-352 |
| Cow position: | chrX:9402514-9402803 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 214 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 78, 51 |
| Conread position: | 72-536 |
| Cow position: | chrX:25321036-25321505 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 76, 87 |
| Conread position: | 141-366 |
| Cow position: | chrX:45200894-45201125 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 161-531 |
| Cow position: | chrX:502564-502942 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 79 |
| Conread position: | 163-536 |
| Cow position: | chrX:9535664-9535278 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 266 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 52, 58 |
| Conread position: | 187-531 |
| Cow position: | chrX:28212917-28212565 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 108 |
| Conread position: | 249-525 |
| Cow position: | chrX:13911912-13912192 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 98, 233 |
Show alignments to all cow chromosomes.