Cow genome map
| Conread name: | rfbs3907b_e1.y1 |
| Conread position: | 1-232 |
| Cow position: | chr23:24522423-24522192 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 144, 157 |
| Conread position: | 1-264 |
| Cow position: | chr23:25698343-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 242, 251 |
| Conread position: | 1-274 |
| Cow position: | chr23:25660464-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 138, 148 |
| Conread position: | 1-284 |
| Cow position: | chr23:24639781-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 201 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 246, 238 |
| Conread position: | 1-314 |
| Cow position: | chr23:25626343-25626653 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 238, 0 |
| Conread position: | 1-315 |
| Cow position: | chr23:24639697-24640011 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 80 |
| Conread position: | 1-316 |
| Cow position: | chr23:24639445-24639760 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 238 |
| Conread position: | 1-316 |
| Cow position: | chr23:25626592-25626907 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 75, 81 |
| Conread position: | 1-325 |
| Cow position: | chr23:24522756-24522435 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 88 |
| Conread position: | 1-343 |
| Cow position: | chr23:25660212-25660554 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 238 |
| Conread position: | 2-316 |
| Cow position: | chr23:24522506-24522192 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-324 |
| Cow position: | chr23:25724065-25723743 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 77 |
| Conread position: | 3-215 |
| Cow position: | chr23:24626539-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 3-315 |
| Cow position: | chr23:24547183-24546871 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 152 |
| Conread position: | 3-316 |
| Cow position: | chr23:24626371-24626684 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 236 |
| Conread position: | 3-346 |
| Cow position: | chr23:24560575-24560232 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-346 |
| Cow position: | chr23:24560659-24560316 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 233 |
| Conread position: | 4-186 |
| Cow position: | chr23:25723895-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 79 |
| Conread position: | 4-198 |
| Cow position: | chr23:24560322-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-204 |
| Cow position: | chr23:24654181-24654381 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 80, 74 |
| Conread position: | 4-217 |
| Cow position: | chr23:24639868-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 72 |
| Conread position: | 4-281 |
| Cow position: | chr23:24560406-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 246, 235 |
| Conread position: | 4-281 |
| Cow position: | chr23:25626763-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 72, 80 |
| Conread position: | 4-293 |
| Cow position: | chr23:25660299-25660588 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 70, 77 |
| Conread position: | 4-295 |
| Cow position: | chr23:25626094-25626385 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 152 |
| Conread position: | 4-296 |
| Cow position: | chr23:24626456-24626746 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 136, 151 |
| Conread position: | 4-314 |
| Cow position: | chr23:24522669-24522362 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 237, 67 |
| Conread position: | 4-314 |
| Cow position: | chr23:24560490-24560180 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 247 |
| Conread position: | 4-314 |
| Cow position: | chr23:24639280-24639590 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 228, 242 |
| Conread position: | 4-314 |
| Cow position: | chr23:25626010-25626320 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 246, 235 |
| Conread position: | 4-315 |
| Cow position: | chr23:24547014-24546703 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 147 |
| Conread position: | 4-315 |
| Cow position: | chr23:24639364-24639675 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 50, 67 |
| Conread position: | 4-315 |
| Cow position: | chr23:25698508-25698197 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 157, 147 |
| Conread position: | 4-316 |
| Cow position: | chr23:24535813-24535501 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 241, 246 |
| Conread position: | 4-316 |
| Cow position: | chr23:24547098-24546786 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 77 |
| Conread position: | 4-316 |
| Cow position: | chr23:24547266-24546954 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 75 |
| Conread position: | 4-316 |
| Cow position: | chr23:25698592-25698280 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 138, 149 |
| Conread position: | 4-317 |
| Cow position: | chr23:24535729-24535415 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 298, 282 |
| Conread position: | 4-321 |
| Cow position: | chr23:24560742-24560425 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 236 |
| Conread position: | 4-346 |
| Cow position: | chr23:24639532-24639874 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 235 |
| Conread position: | 4-346 |
| Cow position: | chr23:25626514-25626853 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 71 |
| Conread position: | 4-346 |
| Cow position: | chr23:25626679-25627021 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 246, 235 |
| Conread position: | 4-346 |
| Cow position: | chr23:25698424-25698082 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 64, 82 |
| Conread position: | 9-281 |
| Cow position: | chr23:24654102-24654374 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 80, 68 |
| Conread position: | 9-316 |
| Cow position: | chr23:24535976-24535669 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 242, 229 |
| Conread position: | 9-316 |
| Cow position: | chr23:24560821-24560514 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 242 |
| Conread position: | 10-316 |
| Cow position: | chr23:25660389-25660695 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 226 |
| Conread position: | 11-345 |
| Cow position: | chr23:24522828-24522499 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 13-314 |
| Cow position: | chr23:25626187-25626488 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 131, 146 |
| Conread position: | 15-314 |
| Cow position: | chr23:24536054-24535755 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 228, 235 |
| Conread position: | 16-320 |
| Cow position: | chr23:24522576-24522271 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 137, 143 |
| Conread position: | 18-346 |
| Cow position: | chr23:25660145-25660473 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 41, 53 |
| Conread position: | 22-318 |
| Cow position: | chr23:24521980-24521684 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 209, 227 |
| Conread position: | 25-314 |
| Cow position: | chr23:24547329-24547040 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 133, 126 |
| Conread position: | 25-346 |
| Cow position: | chr23:24560889-24560568 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 28-315 |
| Cow position: | chr23:24535873-24535586 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 49, 56 |
| Conread position: | 33-315 |
| Cow position: | chr23:24654042-24654324 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 46-314 |
| Cow position: | chr23:25724105-25723837 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 32, 41 |
| Conread position: | 88-308 |
| Cow position: | chr23:25698676-25698456 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 153, 164 |
| Conread position: | 99-316 |
| Cow position: | chr23:25660142-25660359 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 44, 56 |
| Conread position: | 102-316 |
| Cow position: | chr23:24560896-24560682 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 40, 53 |
| Conread position: | 117-346 |
| Cow position: | chr23:24654042-24654271 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 133, 121 |
Show alignments to all cow chromosomes.