Cow genome map
| Conread name: | rfbs3907b_e1.y1 |
| Conread position: | 1-281 |
| Cow position: | chr25:34732464-34732184 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 222, 249 |
| Conread position: | 1-308 |
| Cow position: | chr25:36800859-36801166 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 67, 87 |
| Conread position: | 1-309 |
| Cow position: | chr25:33157077-33156770 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 80 |
| Conread position: | 1-314 |
| Cow position: | chr25:34769644-34769331 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 239 |
| Conread position: | 1-315 |
| Cow position: | chr25:33298791-33299105 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 67, 78 |
| Conread position: | 1-315 |
| Cow position: | chr25:33298875-33299189 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 63, 74 |
| Conread position: | 1-315 |
| Cow position: | chr25:33305424-33305113 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 1-315 |
| Cow position: | chr25:33306321-33306009 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 78, 34 |
| Conread position: | 1-316 |
| Cow position: | chr25:23420359-23420674 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-316 |
| Cow position: | chr25:23420443-23420758 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 242 |
| Conread position: | 1-316 |
| Cow position: | chr25:33157329-33157014 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 78 |
| Conread position: | 1-316 |
| Cow position: | chr25:33157413-33157098 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-316 |
| Cow position: | chr25:34446998-34447313 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 75, 84 |
| Conread position: | 1-316 |
| Cow position: | chr25:34769560-34769245 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 88, 78 |
| Conread position: | 1-316 |
| Cow position: | chr25:34769812-34769497 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 239 |
| Conread position: | 1-317 |
| Cow position: | chr25:34433584-34433897 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 76, 23 |
| Conread position: | 1-319 |
| Cow position: | chr25:33157161-33156843 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 173 |
| Conread position: | 1-344 |
| Cow position: | chr25:34447166-34447509 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 75, 81 |
| Conread position: | 1-344 |
| Cow position: | chr25:34769896-34769553 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 325 |
| Conread position: | 1-345 |
| Cow position: | chr25:25652584-25652928 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 58, 81 |
| Conread position: | 1-345 |
| Cow position: | chr25:34732548-34732204 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 52, 78 |
| Conread position: | 1-346 |
| Cow position: | chr25:34447082-34447427 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 238 |
| Conread position: | 1-346 |
| Cow position: | chr25:34769980-34769635 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 315 |
| Conread position: | 2-202 |
| Cow position: | chr25:33128031-33128231 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-315 |
| Cow position: | chr25:33145075-33145388 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 73, 82 |
| Conread position: | 3-199 |
| Cow position: | chr25:327069-327265 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 136, 146 |
| Conread position: | 3-279 |
| Cow position: | chr25:33127948-33128224 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 82 |
| Conread position: | 3-293 |
| Cow position: | chr25:25652250-25652540 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 56, 76 |
| Conread position: | 3-306 |
| Cow position: | chr25:34763392-34763692 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 139, 66 |
| Conread position: | 3-313 |
| Cow position: | chr25:36800777-36801087 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 14, 10 |
| Conread position: | 3-315 |
| Cow position: | chr25:33299129-33299441 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 86, 78 |
| Conread position: | 3-316 |
| Cow position: | chr25:33127864-33128177 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 74 |
| Conread position: | 4-221 |
| Cow position: | chr25:34763225-34763442 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 51 |
| Conread position: | 4-281 |
| Cow position: | chr25:36801690-36801967 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 48, 63 |
| Conread position: | 4-287 |
| Cow position: | chr25:346511-346794 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 109, 87 |
| Conread position: | 4-305 |
| Cow position: | chr25:33157242-33156941 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 82 |
| Conread position: | 4-309 |
| Cow position: | chr25:33299466-33299771 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 85, 77 |
| Conread position: | 4-309 |
| Cow position: | chr25:36801606-36801911 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 56, 85 |
| Conread position: | 4-311 |
| Cow position: | chr25:33299550-33299853 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 56, 80 |
| Conread position: | 4-314 |
| Cow position: | chr25:33144912-33145220 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 70, 81 |
| Conread position: | 4-314 |
| Cow position: | chr25:34447421-34447729 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 241, 234 |
| Conread position: | 4-314 |
| Cow position: | chr25:34714097-34714407 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-315 |
| Cow position: | chr25:33299046-33299357 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 55, 63 |
| Conread position: | 4-315 |
| Cow position: | chr25:33299298-33299609 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 60, 85 |
| Conread position: | 4-315 |
| Cow position: | chr25:33299382-33299693 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 56, 85 |
| Conread position: | 4-315 |
| Cow position: | chr25:33305256-33304948 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 84, 77 |
| Conread position: | 4-315 |
| Cow position: | chr25:33305819-33305512 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 74, 85 |
| Conread position: | 4-315 |
| Cow position: | chr25:36800694-36801005 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 63, 81 |
| Conread position: | 4-315 |
| Cow position: | chr25:36801522-36801833 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 49, 66 |
| Conread position: | 4-316 |
| Cow position: | chr25:22235976-22236288 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 72, 78 |
| Conread position: | 4-316 |
| Cow position: | chr25:34714265-34714573 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 80, 75 |
| Conread position: | 4-316 |
| Cow position: | chr25:34769725-34769413 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 236 |
| Conread position: | 4-317 |
| Cow position: | chr25:22235892-22236205 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 48, 66 |
| Conread position: | 4-317 |
| Cow position: | chr25:33127781-33128094 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 235 |
| Conread position: | 4-317 |
| Cow position: | chr25:34770061-34769748 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 234 |
| Conread position: | 4-317 |
| Cow position: | chr25:34770145-34769832 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 69 |
| Conread position: | 4-317 |
| Cow position: | chr25:36800946-36801259 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 241, 233 |
| Conread position: | 4-318 |
| Cow position: | chr25:34447337-34447651 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-321 |
| Cow position: | chr25:33157494-33157177 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 233 |
| Conread position: | 4-346 |
| Cow position: | chr25:34447253-34447595 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 230 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 73, 81 |
| Conread position: | 7-315 |
| Cow position: | chr25:33306396-33306097 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 141, 54 |
| Conread position: | 9-316 |
| Cow position: | chr25:33127703-33128009 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 50, 9 |
| Conread position: | 16-209 |
| Cow position: | chr25:36844545-36844352 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 44, 73 |
| Conread position: | 16-309 |
| Cow position: | chr25:326488-326781 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 52, 70 |
| Conread position: | 16-317 |
| Cow position: | chr25:33145008-33145306 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 141, 31 |
| Conread position: | 18-314 |
| Cow position: | chr25:34732615-34732319 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 125, 151 |
| Conread position: | 20-329 |
| Cow position: | chr25:33144844-33145150 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 24-316 |
| Cow position: | chr25:36800462-36800754 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 25-315 |
| Cow position: | chr25:34446938-34447228 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 141, 149 |
| Conread position: | 25-316 |
| Cow position: | chr25:366725-367016 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 117, 127 |
| Conread position: | 25-346 |
| Cow position: | chr25:34732104-34731783 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 114, 131 |
| Conread position: | 26-314 |
| Cow position: | chr25:326924-327213 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 27-314 |
| Cow position: | chr25:33298565-33298852 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 116, 136 |
| Conread position: | 28-344 |
| Cow position: | chr25:34714037-34714353 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 51 |
| Conread position: | 46-314 |
| Cow position: | chr25:23420320-23420588 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 83-316 |
| Cow position: | chr25:34770150-34769917 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 168, 157 |
| Conread position: | 92-328 |
| Cow position: | chr25:34433003-34433239 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 82 |
| Conread position: | 102-346 |
| Cow position: | chr25:34732615-34732371 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 40, 53 |
| Conread position: | 104-317 |
| Cow position: | chr25:414701-414488 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 70 |
| Conread position: | 111-315 |
| Cow position: | chr25:33298565-33298769 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-315 |
| Cow position: | chr25:23420320-23420505 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 38, 47 |
Show alignments to all cow chromosomes.