Cow genome map

Conread name: rfbs3925b_b18.y1

Conread position: 2-151
Cow position: chr12:29779828-29779975 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 15, 111

Conread position: 3-151
Cow position: chr12:4135160-4135016 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 54, 108

Conread position: 4-151
Cow position: chr12:6410652-6410796 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 53, 110

Conread position: 5-112
Cow position: chr12:4801447-4801338 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 5-120
Cow position: chr12:24397082-24397196 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 100
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 13, 63

Conread position: 5-127
Cow position: chr12:1701724-1701845 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 55, 106

Conread position: 5-147
Cow position: chr12:29057470-29057332 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 117
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 55, 118

Conread position: 5-149
Cow position: chr12:24023721-24023861 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 55, 106

Conread position: 5-149
Cow position: chr12:30753800-30753661 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 52, 80

Conread position: 5-150
Cow position: chr12:28213590-28213450 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 118, 0

Conread position: 5-150
Cow position: chr12:41474170-41474029 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 110

Conread position: 5-151
Cow position: chr12:4596545-4596401 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 55, 91

Conread position: 5-151
Cow position: chr12:21780244-21780101 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 121
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 12, 107

Conread position: 5-151
Cow position: chr12:27563296-27563438 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 50, 106

Conread position: 5-151
Cow position: chr12:30919506-30919364 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 55, 106

Conread position: 5-151
Cow position: chr12:35770940-35771082 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 55, 105

Conread position: 5-151
Cow position: chr12:37993649-37993793 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 121
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 8, 106

Conread position: 5-151
Cow position: chr12:47267228-47267370 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 52, 106

Conread position: 5-152
Cow position: chr12:17774875-17774732 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 106

Conread position: 5-153
Cow position: chr12:15173906-15173760 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 8, 110

Conread position: 5-164
Cow position: chr12:44542347-44542189 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 127
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 49, 108

Conread position: 6-141
Cow position: chr12:11109834-11109699 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 105

Conread position: 6-149
Cow position: chr12:5940421-5940281 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 100

Conread position: 6-151
Cow position: chr12:30590848-30590703 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 6, 125

Conread position: 6-151
Cow position: chr12:31269234-31269093 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 51, 105

Conread position: 7-120
Cow position: chr12:27430585-27430473 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 53, 104

Conread position: 8-132
Cow position: chr12:29675064-29675189 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 8-150
Cow position: chr12:29969657-29969519 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 52, 102

Conread position: 8-151
Cow position: chr12:5680761-5680622 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 102

Conread position: 8-152
Cow position: chr12:3197346-3197207 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 52, 75

Conread position: 8-152
Cow position: chr12:9229423-9229562 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 52, 9

Conread position: 8-152
Cow position: chr12:39663121-39663262 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 7, 109

Conread position: 9-150
Cow position: chr12:18765896-18766033 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 51, 102

Conread position: 10-149
Cow position: chr12:31517095-31517230 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 50, 101

Conread position: 10-150
Cow position: chr12:7311457-7311320 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 50, 101

Conread position: 10-150
Cow position: chr12:33976275-33976139 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 50, 100

Conread position: 10-151
Cow position: chr12:42286046-42285909 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 50, 101

Conread position: 10-151
Cow position: chr12:46120756-46120895 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 119

Conread position: 10-151
Cow position: chr12:47804232-47804096 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 99, 0

Conread position: 11-106
Cow position: chr12:23912936-23913032 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 86
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 49, 0

Conread position: 11-117
Cow position: chr12:23446795-23446687 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 11-120
Cow position: chr12:18996885-18996775 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 11-120
Cow position: chr12:31841644-31841536 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 49, 100

Conread position: 11-120
Cow position: chr12:44559925-44559817 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 100

Conread position: 11-126
Cow position: chr12:43854968-43854855 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 100
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 79

Conread position: 11-127
Cow position: chr12:3586193-3586078 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 100

Conread position: 11-127
Cow position: chr12:25441716-25441600 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 34

Conread position: 11-127
Cow position: chr12:42143234-42143120 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 99
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 46, 79

Conread position: 11-136
Cow position: chr12:27572165-27572289 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 100

Conread position: 11-146
Cow position: chr12:7920317-7920186 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 46, 100

Conread position: 11-147
Cow position: chr12:12912862-12912994 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 35, 83

Conread position: 11-147
Cow position: chr12:25814228-25814090 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 115

Conread position: 11-147
Cow position: chr12:42181054-42181186 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 113
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 46, 103

Conread position: 11-149
Cow position: chr12:36994041-36994175 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 100

Conread position: 11-150
Cow position: chr12:11836309-11836174 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 100

Conread position: 11-150
Cow position: chr12:30210558-30210423 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr12:3879905-3880041 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 49, 105

Conread position: 11-151
Cow position: chr12:4341669-4341805 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 49, 101

Conread position: 11-151
Cow position: chr12:4720022-4719886 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 44, 100

Conread position: 11-151
Cow position: chr12:4793272-4793136 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 54, 100

Conread position: 11-151
Cow position: chr12:6241394-6241258 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 49, 99

Conread position: 11-151
Cow position: chr12:7110272-7110136 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 46, 100

Conread position: 11-151
Cow position: chr12:7978112-7977979 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 46, 80

Conread position: 11-151
Cow position: chr12:9914864-9914728 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr12:11587849-11587713 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 46, 100

Conread position: 11-151
Cow position: chr12:15700155-15700017 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 59, 102

Conread position: 11-151
Cow position: chr12:25188263-25188125 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 117

Conread position: 11-151
Cow position: chr12:26217749-26217886 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 112

Conread position: 11-151
Cow position: chr12:26749877-26750014 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 109

Conread position: 11-151
Cow position: chr12:27037375-27037511 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 99

Conread position: 11-151
Cow position: chr12:34161488-34161353 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 49, 99

Conread position: 11-151
Cow position: chr12:35368717-35368581 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 117
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr12:40157950-40158083 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 11-151
Cow position: chr12:41159662-41159529 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 72

Conread position: 11-151
Cow position: chr12:42967069-42966939 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 11

Conread position: 11-152
Cow position: chr12:4866892-4866754 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 118
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 49, 100

Conread position: 11-152
Cow position: chr12:5635378-5635515 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 49, 100

Conread position: 11-182
Cow position: chr12:22894244-22894074 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 18

Conread position: 11-195
Cow position: chr12:22859538-22859362 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 70

Conread position: 11-196
Cow position: chr12:29966177-29966004 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 47, 68

Conread position: 12-122
Cow position: chr12:22752699-22752588 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 98

Conread position: 12-127
Cow position: chr12:6226073-6226184 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 98
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 73, 0

Conread position: 12-136
Cow position: chr12:43354053-43354177 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 96
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 45, 113

Conread position: 12-150
Cow position: chr12:18103538-18103669 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 101

Conread position: 12-151
Cow position: chr12:3623768-3623633 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 48, 99

Conread position: 12-151
Cow position: chr12:4797374-4797239 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 48, 98

Conread position: 12-151
Cow position: chr12:7457471-7457604 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 96

Conread position: 12-151
Cow position: chr12:17881935-17881800 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 53, 101

Conread position: 12-151
Cow position: chr12:23798173-23798040 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 48, 73

Conread position: 12-152
Cow position: chr12:4768999-4768864 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 48, 76

Conread position: 13-118
Cow position: chr12:25456482-25456375 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 13-127
Cow position: chr12:23106010-23105897 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 47, 98

Show alignments to all cow chromosomes.