Cow genome map

Conread name: rfbs3925b_b18.y1

Conread position: 1-125
Cow position: chr13:47227498-47227374 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 111

Conread position: 1-127
Cow position: chr13:43787975-43787850 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 56, 110

Conread position: 1-127
Cow position: chr13:43839814-43839689 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 56, 110

Conread position: 1-152
Cow position: chr13:43829106-43829253 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 126
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 59, 124

Conread position: 1-152
Cow position: chr13:43893461-43893313 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 51, 125

Conread position: 2-142
Cow position: chr13:37751205-37751068 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 87

Conread position: 4-149
Cow position: chr13:15282071-15281934 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 74

Conread position: 4-151
Cow position: chr13:25695902-25695760 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 106, 0

Conread position: 5-108
Cow position: chr13:11942313-11942209 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 85
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 5-127
Cow position: chr13:9884400-9884521 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 55, 105

Conread position: 5-127
Cow position: chr13:37980891-37980771 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 52, 94

Conread position: 5-135
Cow position: chr13:53865500-53865631 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 8, 108

Conread position: 5-147
Cow position: chr13:8609681-8609543 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 72

Conread position: 5-147
Cow position: chr13:51940600-51940738 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 55, 106

Conread position: 5-148
Cow position: chr13:45352895-45353036 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 8, 108

Conread position: 5-149
Cow position: chr13:24753753-24753893 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 118
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 55, 106

Conread position: 5-150
Cow position: chr13:17837815-17837957 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 123
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 8, 107

Conread position: 5-151
Cow position: chr13:14576077-14576218 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 7, 108

Conread position: 5-151
Cow position: chr13:17823086-17822947 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 8, 101

Conread position: 5-151
Cow position: chr13:18615246-18615392 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 110

Conread position: 5-151
Cow position: chr13:20271360-20271218 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 9, 88

Conread position: 5-151
Cow position: chr13:21275723-21275867 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 8, 108

Conread position: 5-151
Cow position: chr13:62007971-62008115 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 124
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 8, 108

Conread position: 5-152
Cow position: chr13:28071737-28071883 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 55, 108

Conread position: 5-166
Cow position: chr13:16908083-16908240 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 55, 106

Conread position: 5-173
Cow position: chr13:6486381-6486220 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 55, 76

Conread position: 6-151
Cow position: chr13:46111836-46111973 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 54, 69

Conread position: 8-149
Cow position: chr13:15193017-15192882 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 52, 82

Conread position: 8-150
Cow position: chr13:7190834-7190982 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 49, 43

Conread position: 8-151
Cow position: chr13:827113-827251 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 5, 92

Conread position: 8-151
Cow position: chr13:12206918-12207056 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 11

Conread position: 9-151
Cow position: chr13:6465819-6465682 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 48, 83

Conread position: 10-148
Cow position: chr13:36666403-36666269 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 47, 101

Conread position: 10-150
Cow position: chr13:17159007-17158869 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 50, 119

Conread position: 10-151
Cow position: chr13:44003572-44003707 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 47, 103

Conread position: 10-151
Cow position: chr13:46515930-46516069 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 11, 103

Conread position: 10-151
Cow position: chr13:51814060-51813928 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 50, 85

Conread position: 10-152
Cow position: chr13:43919390-43919252 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 117
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 50, 101

Conread position: 10-161
Cow position: chr13:17813342-17813491 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 50, 101

Conread position: 10-170
Cow position: chr13:13775372-13775217 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 53, 101

Conread position: 11-106
Cow position: chr13:15808640-15808734 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 85
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 49, 33

Conread position: 11-108
Cow position: chr13:21188240-21188338 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 82
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 11-109
Cow position: chr13:25521043-25520944 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 87
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 11-110
Cow position: chr13:16163454-16163554 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 11-123
Cow position: chr13:6113654-6113541 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 46, 0

Conread position: 11-126
Cow position: chr13:1075167-1075053 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 100

Conread position: 11-127
Cow position: chr13:21294947-21295062 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 46, 100

Conread position: 11-146
Cow position: chr13:7046742-7046873 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 49, 100

Conread position: 11-147
Cow position: chr13:10522809-10522937 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 49, 78

Conread position: 11-148
Cow position: chr13:39398523-39398658 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 113
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 49, 100

Conread position: 11-149
Cow position: chr13:8667491-8667624 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 83

Conread position: 11-149
Cow position: chr13:11643811-11643945 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 112

Conread position: 11-149
Cow position: chr13:16014683-16014819 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 49, 102

Conread position: 11-149
Cow position: chr13:17350227-17350356 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 60

Conread position: 11-149
Cow position: chr13:48554238-48554371 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 98, 0

Conread position: 11-149
Cow position: chr13:56148393-56148529 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 118

Conread position: 11-149
Cow position: chr13:56160574-56160438 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 118

Conread position: 11-150
Cow position: chr13:6183548-6183413 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 98

Conread position: 11-150
Cow position: chr13:9975204-9975067 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 102

Conread position: 11-150
Cow position: chr13:24230086-24230221 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 100

Conread position: 11-150
Cow position: chr13:26369396-26369530 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 46, 62

Conread position: 11-150
Cow position: chr13:36771548-36771417 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 11-150
Cow position: chr13:39367831-39367970 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 49, 104

Conread position: 11-151
Cow position: chr13:3211421-3211557 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 46, 105

Conread position: 11-151
Cow position: chr13:6926389-6926525 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 46, 99

Conread position: 11-151
Cow position: chr13:7076129-7076263 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 48, 102

Conread position: 11-151
Cow position: chr13:8699865-8699729 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 46, 100

Conread position: 11-151
Cow position: chr13:9707876-9707741 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 99, 0

Conread position: 11-151
Cow position: chr13:18340405-18340541 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr13:20288521-20288659 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 46, 107

Conread position: 11-151
Cow position: chr13:21283832-21283696 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 73

Conread position: 11-151
Cow position: chr13:24110352-24110488 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 117
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr13:25428351-25428216 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 49, 103

Conread position: 11-151
Cow position: chr13:34873461-34873597 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 46, 103

Conread position: 11-151
Cow position: chr13:37593075-37592938 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 119
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 46, 101

Conread position: 11-151
Cow position: chr13:40722835-40722699 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 49, 99

Conread position: 11-151
Cow position: chr13:42640258-42640390 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 99

Conread position: 11-151
Cow position: chr13:51901456-51901595 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 49, 118

Conread position: 11-152
Cow position: chr13:12547036-12546899 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 100

Conread position: 11-152
Cow position: chr13:20231318-20231183 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 59

Conread position: 11-152
Cow position: chr13:37381673-37381810 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 49, 100

Conread position: 11-152
Cow position: chr13:56034987-56034851 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 87

Conread position: 11-160
Cow position: chr13:19750587-19750732 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 123
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 49, 57

Conread position: 11-174
Cow position: chr13:11201913-11202079 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 103

Conread position: 12-151
Cow position: chr13:8232875-8233006 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 78

Conread position: 12-151
Cow position: chr13:18166605-18166740 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 48, 100

Conread position: 12-151
Cow position: chr13:20519934-20520069 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 39, 98

Conread position: 12-151
Cow position: chr13:24715114-24715250 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 45, 91

Conread position: 12-151
Cow position: chr13:34261104-34261242 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 45, 104

Conread position: 12-152
Cow position: chr13:6079539-6079403 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 99

Conread position: 13-149
Cow position: chr13:12876098-12875969 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 108
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 13-150
Cow position: chr13:52055718-52055585 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 119
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 44, 98

Conread position: 13-151
Cow position: chr13:37640464-37640596 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 47, 9

Conread position: 16-127
Cow position: chr13:51857008-51856898 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 41, 94

Conread position: 19-150
Cow position: chr13:18516926-18517052 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 100, 0

Conread position: 22-151
Cow position: chr13:19240314-19240443 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 102, 22

Show alignments to all cow chromosomes.