Cow genome map

Conread name: rfbs3925b_b18.y1

Conread position: 2-151
Cow position: chr15:31495256-31495112 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 120
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 58, 109

Conread position: 4-150
Cow position: chr15:1857695-1857835 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 12

Conread position: 5-110
Cow position: chr15:12332443-12332550 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 5-110
Cow position: chr15:16230191-16230298 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 92
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 7, 0

Conread position: 5-116
Cow position: chr15:40309361-40309473 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 8, 49

Conread position: 5-148
Cow position: chr15:39286440-39286300 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 8, 39

Conread position: 5-149
Cow position: chr15:5158342-5158484 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 120
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 9, 108

Conread position: 5-149
Cow position: chr15:22444016-22443878 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 87

Conread position: 5-149
Cow position: chr15:26529860-26530000 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 52, 106

Conread position: 5-150
Cow position: chr15:15154269-15154411 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 8, 32

Conread position: 5-151
Cow position: chr15:795052-794909 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 122
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 23, 106

Conread position: 5-151
Cow position: chr15:4138104-4138244 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 122
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 6, 72

Conread position: 5-151
Cow position: chr15:5683120-5683252 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 5-151
Cow position: chr15:6272917-6272778 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 55, 24

Conread position: 5-151
Cow position: chr15:6427662-6427518 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 8, 124

Conread position: 5-151
Cow position: chr15:17084177-17084322 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 8, 110

Conread position: 5-151
Cow position: chr15:20422809-20422670 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 87

Conread position: 5-151
Cow position: chr15:52432313-52432458 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 55, 125

Conread position: 5-152
Cow position: chr15:1297709-1297852 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 55, 106

Conread position: 5-152
Cow position: chr15:7479028-7478883 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 11, 108

Conread position: 5-152
Cow position: chr15:34284441-34284297 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 49, 120

Conread position: 5-159
Cow position: chr15:35577172-35577330 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 128
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 54, 129

Conread position: 6-151
Cow position: chr15:43626439-43626581 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 122
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 12, 106

Conread position: 7-150
Cow position: chr15:20351806-20351943 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 53, 12

Conread position: 7-152
Cow position: chr15:17196121-17196262 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 50, 10

Conread position: 8-150
Cow position: chr15:13554325-13554464 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 5, 104

Conread position: 8-150
Cow position: chr15:41000098-40999960 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 5, 88

Conread position: 8-151
Cow position: chr15:2141330-2141191 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 52, 103

Conread position: 8-152
Cow position: chr15:6128990-6128853 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 32

Conread position: 9-151
Cow position: chr15:662494-662356 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 102

Conread position: 10-110
Cow position: chr15:16603800-16603901 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 10-151
Cow position: chr15:244756-244893 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 50, 100

Conread position: 10-151
Cow position: chr15:6037479-6037343 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 77

Conread position: 10-152
Cow position: chr15:4295738-4295876 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 50, 101

Conread position: 10-152
Cow position: chr15:43114745-43114614 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 50, 66

Conread position: 11-110
Cow position: chr15:19950455-19950554 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 11-116
Cow position: chr15:42190422-42190527 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 76

Conread position: 11-124
Cow position: chr15:29793217-29793105 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 100

Conread position: 11-125
Cow position: chr15:20487227-20487114 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 105

Conread position: 11-127
Cow position: chr15:4500679-4500796 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 11-128
Cow position: chr15:12913522-12913400 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 11-141
Cow position: chr15:4485130-4485256 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 100

Conread position: 11-144
Cow position: chr15:16928118-16927989 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 49, 100

Conread position: 11-147
Cow position: chr15:9781447-9781575 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 49, 79

Conread position: 11-148
Cow position: chr15:18776775-18776642 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 99

Conread position: 11-149
Cow position: chr15:1804362-1804227 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 103

Conread position: 11-149
Cow position: chr15:9497524-9497390 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 49, 99

Conread position: 11-149
Cow position: chr15:16112376-16112510 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 49, 109

Conread position: 11-149
Cow position: chr15:22871590-22871719 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 78, 0

Conread position: 11-150
Cow position: chr15:286454-286589 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 48, 100

Conread position: 11-150
Cow position: chr15:9465653-9465788 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 44, 100

Conread position: 11-150
Cow position: chr15:23719507-23719372 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 49, 100

Conread position: 11-150
Cow position: chr15:32324229-32324097 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 70

Conread position: 11-150
Cow position: chr15:38883125-38883258 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 80

Conread position: 11-150
Cow position: chr15:39621314-39621449 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 100

Conread position: 11-150
Cow position: chr15:49922110-49922245 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 99

Conread position: 11-151
Cow position: chr15:2145162-2145025 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 98

Conread position: 11-151
Cow position: chr15:12870888-12870752 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 46, 100

Conread position: 11-151
Cow position: chr15:14176523-14176387 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 122
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr15:20534474-20534338 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 49, 113

Conread position: 11-151
Cow position: chr15:21389187-21389055 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 8

Conread position: 11-151
Cow position: chr15:21821948-21821812 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 117
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr15:22939349-22939213 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 47, 103

Conread position: 11-151
Cow position: chr15:24629389-24629253 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 46, 99

Conread position: 11-151
Cow position: chr15:26912096-26911964 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 49, 70

Conread position: 11-151
Cow position: chr15:27900534-27900399 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 46, 94

Conread position: 11-151
Cow position: chr15:31928920-31928784 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 49, 103

Conread position: 11-151
Cow position: chr15:33976719-33976577 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 122

Conread position: 11-151
Cow position: chr15:34139957-34140096 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 98

Conread position: 11-151
Cow position: chr15:35205176-35205034 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 120
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 49, 12

Conread position: 11-151
Cow position: chr15:35441102-35440970 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 49, 79

Conread position: 11-151
Cow position: chr15:35641991-35642132 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 93, 120

Conread position: 11-151
Cow position: chr15:36388267-36388403 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr15:38652624-38652489 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 34

Conread position: 11-151
Cow position: chr15:39316866-39316730 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 49, 102

Conread position: 11-151
Cow position: chr15:41527996-41527864 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 86

Conread position: 11-152
Cow position: chr15:14020461-14020598 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 46, 113

Conread position: 11-152
Cow position: chr15:20459332-20459192 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 119
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 49, 118

Conread position: 11-152
Cow position: chr15:26919299-26919162 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 100

Conread position: 11-152
Cow position: chr15:28823841-28823700 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 49, 12

Conread position: 11-154
Cow position: chr15:5235021-5234885 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 82

Conread position: 12-122
Cow position: chr15:29927944-29928054 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 12-125
Cow position: chr15:36458225-36458113 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 102

Conread position: 12-150
Cow position: chr15:36391651-36391786 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 91

Conread position: 12-151
Cow position: chr15:19553947-19553809 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 45, 115

Conread position: 12-152
Cow position: chr15:17100732-17100597 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 71

Conread position: 12-152
Cow position: chr15:44280079-44280215 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 48, 98

Conread position: 13-150
Cow position: chr15:31637279-31637412 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 101

Conread position: 14-148
Cow position: chr15:10660576-10660446 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 97

Conread position: 14-150
Cow position: chr15:43599168-43599300 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 46, 97

Conread position: 15-150
Cow position: chr15:4248128-4248259 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 99

Conread position: 19-152
Cow position: chr15:29604716-29604587 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 38, 92

Show alignments to all cow chromosomes.