Cow genome map

Conread name: rfbs3925b_b18.y1

Conread position: 4-111
Cow position: chr18:50612444-50612552 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 4-151
Cow position: chr18:22170705-22170562 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 51, 107

Conread position: 5-110
Cow position: chr18:39460308-39460200 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 5-120
Cow position: chr18:4489820-4489936 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 8, 108

Conread position: 5-150
Cow position: chr18:22214574-22214433 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 119
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 55, 105

Conread position: 5-151
Cow position: chr18:11867427-11867281 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 8, 110

Conread position: 5-151
Cow position: chr18:43020317-43020458 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 95

Conread position: 5-151
Cow position: chr18:43555438-43555580 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 55, 106

Conread position: 5-151
Cow position: chr18:46072549-46072407 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 120
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 55, 106

Conread position: 5-151
Cow position: chr18:56181370-56181517 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 53

Conread position: 7-144
Cow position: chr18:19796839-19796972 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 109

Conread position: 7-149
Cow position: chr18:16659348-16659486 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 50, 104

Conread position: 7-150
Cow position: chr18:22120801-22120940 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 50, 104

Conread position: 7-151
Cow position: chr18:39623884-39623744 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 50, 104

Conread position: 8-151
Cow position: chr18:50359415-50359276 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 119
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 52, 103

Conread position: 9-150
Cow position: chr18:5701330-5701194 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 51, 89

Conread position: 9-161
Cow position: chr18:2619131-2619279 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 102

Conread position: 10-116
Cow position: chr18:47247470-47247363 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 10-147
Cow position: chr18:24342924-24342791 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 113
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 50, 101

Conread position: 10-150
Cow position: chr18:10322887-10322751 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 47, 101

Conread position: 10-151
Cow position: chr18:8208344-8208491 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 10-151
Cow position: chr18:25282473-25282609 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 85

Conread position: 10-151
Cow position: chr18:52855136-52854999 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 47, 109

Conread position: 10-168
Cow position: chr18:49655767-49655611 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 34

Conread position: 11-119
Cow position: chr18:45185952-45185843 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 11-122
Cow position: chr18:23821752-23821862 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 99

Conread position: 11-127
Cow position: chr18:42719917-42720025 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 11-127
Cow position: chr18:47410623-47410508 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 99
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 49, 99

Conread position: 11-141
Cow position: chr18:5189613-5189747 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 11-147
Cow position: chr18:11657736-11657603 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 66

Conread position: 11-147
Cow position: chr18:42427700-42427568 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 116
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 46, 100

Conread position: 11-149
Cow position: chr18:5632348-5632214 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 46, 100

Conread position: 11-149
Cow position: chr18:7359825-7359691 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 99

Conread position: 11-149
Cow position: chr18:51757173-51757040 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 101, 0

Conread position: 11-149
Cow position: chr18:56190882-56191015 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 46, 85

Conread position: 11-150
Cow position: chr18:4203850-4203983 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 70

Conread position: 11-150
Cow position: chr18:4495806-4495941 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 49, 100

Conread position: 11-150
Cow position: chr18:10656519-10656383 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 49, 101

Conread position: 11-150
Cow position: chr18:51867467-51867604 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 74

Conread position: 11-151
Cow position: chr18:1954509-1954645 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 99

Conread position: 11-151
Cow position: chr18:2549223-2549359 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 46, 100

Conread position: 11-151
Cow position: chr18:3211958-3211822 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 46, 100

Conread position: 11-151
Cow position: chr18:5647893-5647757 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr18:7956228-7956090 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 118

Conread position: 11-151
Cow position: chr18:10214110-10214247 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 44, 115

Conread position: 11-151
Cow position: chr18:12273738-12273602 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 103

Conread position: 11-151
Cow position: chr18:19273016-19273152 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr18:19896371-19896507 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 46, 100

Conread position: 11-151
Cow position: chr18:21192334-21192467 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 34

Conread position: 11-151
Cow position: chr18:24508151-24508292 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 49, 121

Conread position: 11-151
Cow position: chr18:24719393-24719257 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr18:30586145-30586277 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 79

Conread position: 11-151
Cow position: chr18:31557080-31557216 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 101

Conread position: 11-151
Cow position: chr18:37023470-37023606 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr18:47525488-47525352 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 49, 98

Conread position: 11-151
Cow position: chr18:47920826-47920684 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 11-151
Cow position: chr18:51655962-51656098 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr18:51691382-51691518 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 118
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 48, 100

Conread position: 11-151
Cow position: chr18:52251777-52251913 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 46, 100

Conread position: 11-151
Cow position: chr18:56159541-56159406 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 98, 0

Conread position: 11-152
Cow position: chr18:135576-135711 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 11-152
Cow position: chr18:11754210-11754076 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 100

Conread position: 11-152
Cow position: chr18:45558228-45558090 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 103

Conread position: 11-152
Cow position: chr18:47835904-47835768 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 64

Conread position: 11-152
Cow position: chr18:51405831-51405961 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 0

Conread position: 11-152
Cow position: chr18:51676011-51676146 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 117
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 21, 0

Conread position: 11-153
Cow position: chr18:51392563-51392698 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 120
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 84

Conread position: 11-159
Cow position: chr18:39168611-39168467 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 68

Conread position: 12-149
Cow position: chr18:27109213-27109346 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 99

Conread position: 12-151
Cow position: chr18:4556090-4556222 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 48, 73

Conread position: 12-151
Cow position: chr18:51192661-51192796 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 48, 99

Conread position: 12-151
Cow position: chr18:53642671-53642804 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 61

Conread position: 13-120
Cow position: chr18:49982808-49982700 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 13-148
Cow position: chr18:18918882-18919011 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 13-149
Cow position: chr18:6075317-6075449 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 47, 100

Conread position: 13-151
Cow position: chr18:11377442-11377309 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 47, 60

Conread position: 13-151
Cow position: chr18:19883611-19883476 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 118
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 47, 103

Conread position: 13-151
Cow position: chr18:23162964-23162837 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 71

Conread position: 13-151
Cow position: chr18:47417075-47416946 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 42, 0

Conread position: 13-151
Cow position: chr18:52414045-52413909 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 47, 94

Conread position: 15-110
Cow position: chr18:24022694-24022598 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 81
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 15-150
Cow position: chr18:44801813-44801944 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 42, 95

Conread position: 18-152
Cow position: chr18:46048825-46048695 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 92

Conread position: 19-111
Cow position: chr18:28297792-28297886 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 83
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 41, 0

Conread position: 19-151
Cow position: chr18:1732802-1732924 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 24-149
Cow position: chr18:4182121-4182241 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 21

Show alignments to all cow chromosomes.