Cow genome map

Conread name: rfbs3925b_b18.y1

Conread position: 4-152
Cow position: chr21:38720431-38720292 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 5-108
Cow position: chr21:30970118-30970014 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 5-127
Cow position: chr21:40059213-40059090 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 5-127
Cow position: chr21:48482347-48482466 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 55, 92

Conread position: 5-128
Cow position: chr21:745358-745237 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 8, 47

Conread position: 5-149
Cow position: chr21:30938481-30938629 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 8, 130

Conread position: 5-149
Cow position: chr21:37837881-37838023 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 8, 108

Conread position: 5-150
Cow position: chr21:3360830-3360971 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 8, 111

Conread position: 5-150
Cow position: chr21:7221157-7221298 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 15

Conread position: 5-150
Cow position: chr21:8206953-8206814 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 5-150
Cow position: chr21:46470366-46470228 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 55, 79

Conread position: 5-150
Cow position: chr21:46848945-46849085 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 59, 93

Conread position: 5-150
Cow position: chr21:47763935-47764075 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 45

Conread position: 5-151
Cow position: chr21:5898218-5898360 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 7, 95

Conread position: 5-151
Cow position: chr21:8430915-8431059 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 8, 108

Conread position: 5-151
Cow position: chr21:17193566-17193710 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 108

Conread position: 5-151
Cow position: chr21:24642695-24642562 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 120
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 5-151
Cow position: chr21:31159580-31159443 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 123
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 50, 72

Conread position: 5-151
Cow position: chr21:37344918-37345058 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 55, 105

Conread position: 5-152
Cow position: chr21:6051686-6051542 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 52, 106

Conread position: 5-152
Cow position: chr21:41597996-41597851 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 121
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 7, 108

Conread position: 6-136
Cow position: chr21:27521158-27521284 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 70

Conread position: 6-151
Cow position: chr21:20160860-20160717 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 119
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 7, 107

Conread position: 6-152
Cow position: chr21:10538073-10538215 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 51, 105

Conread position: 8-110
Cow position: chr21:5214528-5214425 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 89
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 8-116
Cow position: chr21:7493093-7493202 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 8-150
Cow position: chr21:42562806-42562674 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 52, 9

Conread position: 8-151
Cow position: chr21:71766-71628 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 37

Conread position: 8-151
Cow position: chr21:17642806-17642943 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 52, 19

Conread position: 8-151
Cow position: chr21:45920878-45921017 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 5, 17

Conread position: 8-152
Cow position: chr21:6388179-6388039 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 52, 102

Conread position: 8-152
Cow position: chr21:8213101-8213239 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 52, 77

Conread position: 9-150
Cow position: chr21:471853-471718 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 49, 38

Conread position: 9-151
Cow position: chr21:10633462-10633596 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 26

Conread position: 10-149
Cow position: chr21:868746-868881 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 50, 101

Conread position: 10-149
Cow position: chr21:6736011-6736146 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 47, 100

Conread position: 10-149
Cow position: chr21:17063099-17062967 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 50, 74

Conread position: 10-149
Cow position: chr21:30256096-30256226 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 50, 62

Conread position: 10-151
Cow position: chr21:5427115-5426981 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 47, 32

Conread position: 10-151
Cow position: chr21:28924287-28924150 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 122
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 50, 101

Conread position: 10-151
Cow position: chr21:42384686-42384549 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 50, 101

Conread position: 11-110
Cow position: chr21:37361065-37361165 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 11-110
Cow position: chr21:42135439-42135539 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 11-120
Cow position: chr21:5405993-5405883 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 11-120
Cow position: chr21:29418745-29418639 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 79

Conread position: 11-124
Cow position: chr21:42131178-42131292 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 11-125
Cow position: chr21:41051065-41050953 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 99, 0

Conread position: 11-127
Cow position: chr21:23321901-23322016 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 100

Conread position: 11-136
Cow position: chr21:17184094-17183970 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 46, 100

Conread position: 11-145
Cow position: chr21:28237531-28237659 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 70

Conread position: 11-145
Cow position: chr21:30980401-30980530 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 74

Conread position: 11-145
Cow position: chr21:32339563-32339693 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 118
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 49, 100

Conread position: 11-146
Cow position: chr21:15976809-15976679 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 112
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 99, 0

Conread position: 11-149
Cow position: chr21:13225892-13225758 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 44, 100

Conread position: 11-149
Cow position: chr21:25383203-25383067 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 92

Conread position: 11-149
Cow position: chr21:36795780-36795646 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 49, 99

Conread position: 11-149
Cow position: chr21:42007285-42007418 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 100

Conread position: 11-150
Cow position: chr21:10001252-10001117 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 100

Conread position: 11-150
Cow position: chr21:19359999-19360134 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 99

Conread position: 11-150
Cow position: chr21:22939947-22939809 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 46, 104

Conread position: 11-151
Cow position: chr21:33896-33760 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 46, 100

Conread position: 11-151
Cow position: chr21:396044-395909 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 117
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 49, 88

Conread position: 11-151
Cow position: chr21:3585191-3585327 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr21:6998124-6997981 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 46, 0

Conread position: 11-151
Cow position: chr21:7768615-7768479 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr21:10004709-10004844 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 120
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 46, 70

Conread position: 11-151
Cow position: chr21:23568405-23568265 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 120

Conread position: 11-151
Cow position: chr21:23587058-23586923 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 26

Conread position: 11-151
Cow position: chr21:26245091-26244955 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 117
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr21:27677657-27677523 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 72

Conread position: 11-151
Cow position: chr21:28244647-28244512 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 46, 100

Conread position: 11-151
Cow position: chr21:30119871-30119735 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr21:30835540-30835407 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 101

Conread position: 11-151
Cow position: chr21:36508411-36508279 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 76

Conread position: 11-151
Cow position: chr21:40266298-40266166 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 88

Conread position: 11-151
Cow position: chr21:45473581-45473717 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 49, 100

Conread position: 11-152
Cow position: chr21:40475675-40475539 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 46, 101

Conread position: 11-152
Cow position: chr21:40589305-40589444 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 51, 118

Conread position: 11-153
Cow position: chr21:41041120-41040982 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 49, 9

Conread position: 11-155
Cow position: chr21:36910108-36909968 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 49, 100

Conread position: 12-151
Cow position: chr21:13164035-13163900 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 99

Conread position: 12-151
Cow position: chr21:37706239-37706374 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 48, 108

Conread position: 12-152
Cow position: chr21:36763237-36763101 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 49, 99

Conread position: 13-151
Cow position: chr21:42413922-42414057 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 47, 94

Conread position: 14-124
Cow position: chr21:27406070-27406181 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 14-127
Cow position: chr21:38267888-38268000 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 97

Conread position: 14-135
Cow position: chr21:19927093-19927209 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 69, 0

Conread position: 14-151
Cow position: chr21:3763569-3763701 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 96, 0

Conread position: 16-151
Cow position: chr21:42841425-42841556 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 95

Conread position: 19-147
Cow position: chr21:35647659-35647783 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 41, 93

Conread position: 20-151
Cow position: chr21:13584893-13585018 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 40, 93

Conread position: 20-151
Cow position: chr21:38900941-38900815 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 106
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 90, 0

Show alignments to all cow chromosomes.