Cow genome map
| Conread name: | rfbs3925b_b18.y1 |
| Conread position: | 4-152 |
| Cow position: | chr27:21393672-21393526 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 107 |
| Conread position: | 5-106 |
| Cow position: | chr27:21951142-21951039 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 5-108 |
| Cow position: | chr27:24477254-24477358 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 5-112 |
| Cow position: | chr27:16965412-16965524 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 5-119 |
| Cow position: | chr27:232389-232506 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 5-127 |
| Cow position: | chr27:20548648-20548769 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 106 |
| Conread position: | 5-130 |
| Cow position: | chr27:24303782-24303908 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 8, 117 |
| Conread position: | 5-143 |
| Cow position: | chr27:22723857-22723722 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 9, 106 |
| Conread position: | 5-149 |
| Cow position: | chr27:15865442-15865584 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 8, 108 |
| Conread position: | 5-149 |
| Cow position: | chr27:17646331-17646191 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 106 |
| Conread position: | 5-151 |
| Cow position: | chr27:25151929-25152064 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 49 |
| Conread position: | 5-151 |
| Cow position: | chr27:26090475-26090332 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 17, 120 |
| Conread position: | 5-151 |
| Cow position: | chr27:27673180-27673037 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 13, 96 |
| Conread position: | 5-152 |
| Cow position: | chr27:20749174-20749034 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 29 |
| Conread position: | 5-167 |
| Cow position: | chr27:19755933-19756091 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 8, 108 |
| Conread position: | 6-243 |
| Cow position: | chr27:27648478-27648238 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 10 |
| Conread position: | 7-151 |
| Cow position: | chr27:7935318-7935177 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 53, 116 |
| Conread position: | 8-141 |
| Cow position: | chr27:13940717-13940588 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 47, 103 |
| Conread position: | 8-150 |
| Cow position: | chr27:20812745-20812883 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 52, 102 |
| Conread position: | 8-151 |
| Cow position: | chr27:30389457-30389318 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 10-110 |
| Cow position: | chr27:29658871-29658772 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 10-151 |
| Cow position: | chr27:11561618-11561755 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 50, 110 |
| Conread position: | 10-151 |
| Cow position: | chr27:22245469-22245605 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 14, 60 |
| Conread position: | 10-152 |
| Cow position: | chr27:12246496-12246633 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 85 |
| Conread position: | 10-176 |
| Cow position: | chr27:13411526-13411364 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 11-106 |
| Cow position: | chr27:18491400-18491495 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 11-118 |
| Cow position: | chr27:26909748-26909641 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 102 |
| Conread position: | 11-125 |
| Cow position: | chr27:17918874-17918761 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 11-126 |
| Cow position: | chr27:22153702-22153816 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 11-126 |
| Cow position: | chr27:27255831-27255945 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 11-127 |
| Cow position: | chr27:6541475-6541590 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 11-127 |
| Cow position: | chr27:26400878-26400763 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 100 |
| Conread position: | 11-145 |
| Cow position: | chr27:30489567-30489437 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 11-146 |
| Cow position: | chr27:6550307-6550433 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 46, 85 |
| Conread position: | 11-146 |
| Cow position: | chr27:29693321-29693452 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 46, 100 |
| Conread position: | 11-147 |
| Cow position: | chr27:16705094-16705226 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 11-148 |
| Cow position: | chr27:23545487-23545353 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 101 |
| Conread position: | 11-149 |
| Cow position: | chr27:9977525-9977662 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 21, 101 |
| Conread position: | 11-149 |
| Cow position: | chr27:26112072-26111937 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 44, 102 |
| Conread position: | 11-150 |
| Cow position: | chr27:11480793-11480658 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 11-150 |
| Cow position: | chr27:11982802-11982668 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 11-150 |
| Cow position: | chr27:15867233-15867374 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 122 |
| Conread position: | 11-150 |
| Cow position: | chr27:27064596-27064461 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 46, 100 |
| Conread position: | 11-151 |
| Cow position: | chr27:1637092-1636956 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 11-151 |
| Cow position: | chr27:4386218-4386082 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 108 |
| Conread position: | 11-151 |
| Cow position: | chr27:13318131-13317995 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 46, 104 |
| Conread position: | 11-151 |
| Cow position: | chr27:17918470-17918334 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 11-151 |
| Cow position: | chr27:26188673-26188808 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 85 |
| Conread position: | 11-151 |
| Cow position: | chr27:26413411-26413275 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 43, 100 |
| Conread position: | 11-151 |
| Cow position: | chr27:27438662-27438525 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 44, 70 |
| Conread position: | 11-151 |
| Cow position: | chr27:30359250-30359386 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 91 |
| Conread position: | 11-151 |
| Cow position: | chr27:31386788-31386651 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 11-152 |
| Cow position: | chr27:2592385-2592523 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 101 |
| Conread position: | 11-152 |
| Cow position: | chr27:22559980-22559847 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 11-164 |
| Cow position: | chr27:29388514-29388665 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 101 |
| Conread position: | 12-122 |
| Cow position: | chr27:19452846-19452957 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 12-122 |
| Cow position: | chr27:26236175-26236279 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 12-148 |
| Cow position: | chr27:212800-212933 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 45, 102 |
| Conread position: | 12-150 |
| Cow position: | chr27:18435289-18435155 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 44, 99 |
| Conread position: | 12-150 |
| Cow position: | chr27:27270698-27270563 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 117 |
| Conread position: | 12-151 |
| Cow position: | chr27:8790899-8790762 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 106 |
| Conread position: | 12-151 |
| Cow position: | chr27:25276987-25277119 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 72 |
| Conread position: | 12-152 |
| Cow position: | chr27:22423360-22423496 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 48, 99 |
| Conread position: | 13-108 |
| Cow position: | chr27:26118345-26118441 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 13-150 |
| Cow position: | chr27:1789293-1789161 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 98 |
| Conread position: | 13-152 |
| Cow position: | chr27:30764881-30765011 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 14-149 |
| Cow position: | chr27:19660778-19660909 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 46, 97 |
| Conread position: | 17-151 |
| Cow position: | chr27:15643024-15643152 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 20-150 |
| Cow position: | chr27:29184985-29184859 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 40, 94 |
Show alignments to all cow chromosomes.