Cow genome map
| Conread name: | rfbs3925b_b18.y1 |
| Conread position: | 5-110 |
| Cow position: | chr29:43088425-43088322 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 79 |
| Conread position: | 5-128 |
| Cow position: | chr29:24051263-24051386 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 8, 107 |
| Conread position: | 5-133 |
| Cow position: | chr29:4441088-4441215 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 40 |
| Conread position: | 5-147 |
| Cow position: | chr29:28979384-28979519 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 86 |
| Conread position: | 5-149 |
| Cow position: | chr29:11053743-11053882 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 55, 89 |
| Conread position: | 5-151 |
| Cow position: | chr29:15947286-15947142 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 108 |
| Conread position: | 5-151 |
| Cow position: | chr29:16609867-16609723 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 108 |
| Conread position: | 5-168 |
| Cow position: | chr29:11647211-11647052 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 106 |
| Conread position: | 7-149 |
| Cow position: | chr29:7955876-7956013 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 8-127 |
| Cow position: | chr29:19244345-19244463 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 103 |
| Conread position: | 8-151 |
| Cow position: | chr29:8862367-8862504 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 75 |
| Conread position: | 9-151 |
| Cow position: | chr29:6015239-6015099 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 89 |
| Conread position: | 10-106 |
| Cow position: | chr29:3538564-3538661 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 81 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 10-127 |
| Cow position: | chr29:34359709-34359824 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 102 |
| Conread position: | 10-129 |
| Cow position: | chr29:32799600-32799717 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 50, 73 |
| Conread position: | 10-151 |
| Cow position: | chr29:23825785-23825645 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 91 |
| Conread position: | 10-151 |
| Cow position: | chr29:29057287-29057154 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 47, 81 |
| Conread position: | 10-152 |
| Cow position: | chr29:44684210-44684077 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 10-160 |
| Cow position: | chr29:3685400-3685554 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 63 |
| Conread position: | 11-109 |
| Cow position: | chr29:33393789-33393690 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 11-122 |
| Cow position: | chr29:22175792-22175680 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 11-123 |
| Cow position: | chr29:19059972-19060082 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 31 |
| Conread position: | 11-124 |
| Cow position: | chr29:18878370-18878484 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 11-125 |
| Cow position: | chr29:629649-629536 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 11-126 |
| Cow position: | chr29:25333350-25333462 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 46, 73 |
| Conread position: | 11-149 |
| Cow position: | chr29:7103669-7103535 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 100 |
| Conread position: | 11-149 |
| Cow position: | chr29:21196538-21196674 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 118 |
| Conread position: | 11-149 |
| Cow position: | chr29:34745548-34745680 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 11-150 |
| Cow position: | chr29:13867099-13867234 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 46, 100 |
| Conread position: | 11-150 |
| Cow position: | chr29:19949418-19949285 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 73 |
| Conread position: | 11-150 |
| Cow position: | chr29:40097073-40096942 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 72 |
| Conread position: | 11-151 |
| Cow position: | chr29:2056172-2056036 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 46, 100 |
| Conread position: | 11-151 |
| Cow position: | chr29:2262884-2263017 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 49, 73 |
| Conread position: | 11-151 |
| Cow position: | chr29:4120965-4120829 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 49, 102 |
| Conread position: | 11-151 |
| Cow position: | chr29:5520374-5520510 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 11-151 |
| Cow position: | chr29:12310119-12309983 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 100 |
| Conread position: | 11-151 |
| Cow position: | chr29:13028551-13028419 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 11-151 |
| Cow position: | chr29:13373412-13373272 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 49, 104 |
| Conread position: | 11-151 |
| Cow position: | chr29:23874571-23874435 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 99 |
| Conread position: | 11-151 |
| Cow position: | chr29:24187954-24188090 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 46, 100 |
| Conread position: | 11-151 |
| Cow position: | chr29:26017391-26017529 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 44, 116 |
| Conread position: | 11-151 |
| Cow position: | chr29:31934490-31934354 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 11-151 |
| Cow position: | chr29:31981942-31981806 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 49, 99 |
| Conread position: | 11-151 |
| Cow position: | chr29:40298909-40299045 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 11-151 |
| Cow position: | chr29:40994780-40994915 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 49, 74 |
| Conread position: | 11-151 |
| Cow position: | chr29:43544492-43544627 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 11-152 |
| Cow position: | chr29:8926350-8926487 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 99 |
| Conread position: | 11-170 |
| Cow position: | chr29:4423328-4423481 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 49, 100 |
| Conread position: | 12-149 |
| Cow position: | chr29:4085419-4085290 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 43, 81 |
| Conread position: | 12-149 |
| Cow position: | chr29:8163719-8163850 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 101 |
| Conread position: | 12-152 |
| Cow position: | chr29:16365775-16365915 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 13-123 |
| Cow position: | chr29:14576968-14576857 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 88 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 13-148 |
| Cow position: | chr29:38581088-38580958 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 72 |
| Conread position: | 13-152 |
| Cow position: | chr29:32926213-32926078 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 98 |
| Conread position: | 13-152 |
| Cow position: | chr29:34297459-34297595 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 42, 98 |
| Conread position: | 14-129 |
| Cow position: | chr29:27873709-27873595 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 46, 97 |
| Conread position: | 14-152 |
| Cow position: | chr29:1229715-1229582 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 97 |
| Conread position: | 19-124 |
| Cow position: | chr29:8634757-8634651 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.