Cow genome map

Conread name: rfbs3925b_b18.y1

Conread position: 5-108
Cow position: chr5:51277707-51277812 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 5-116
Cow position: chr5:42623035-42623146 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 55, 78

Conread position: 5-124
Cow position: chr5:44734578-44734698 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 8, 108

Conread position: 5-126
Cow position: chr5:51490457-51490577 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 55, 106

Conread position: 5-131
Cow position: chr5:29979813-29979939 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 55, 104

Conread position: 5-147
Cow position: chr5:5856003-5855865 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 50, 106

Conread position: 5-148
Cow position: chr5:9369126-9369265 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 52, 106

Conread position: 5-149
Cow position: chr5:28230310-28230167 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 10, 125

Conread position: 5-151
Cow position: chr5:4710007-4710148 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 55, 85

Conread position: 5-151
Cow position: chr5:23678558-23678696 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 43, 54

Conread position: 5-151
Cow position: chr5:29828191-29828049 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 123
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 55, 37

Conread position: 5-151
Cow position: chr5:30562079-30561935 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 16, 108

Conread position: 5-151
Cow position: chr5:33273839-33273698 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 7, 77

Conread position: 5-151
Cow position: chr5:38717454-38717313 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 55, 85

Conread position: 5-151
Cow position: chr5:49501679-49501821 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 120
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 55, 106

Conread position: 5-151
Cow position: chr5:50101227-50101373 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 114

Conread position: 5-151
Cow position: chr5:51053502-51053649 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 122
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 8, 109

Conread position: 5-151
Cow position: chr5:55129490-55129346 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 8, 108

Conread position: 5-152
Cow position: chr5:44796586-44796731 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 8, 107

Conread position: 5-152
Cow position: chr5:58856247-58856105 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 52, 74

Conread position: 5-154
Cow position: chr5:46322658-46322799 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 55, 97

Conread position: 6-110
Cow position: chr5:49821573-49821467 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 91
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 6-151
Cow position: chr5:63656620-63656480 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 51, 105

Conread position: 7-119
Cow position: chr5:20812688-20812576 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 8-135
Cow position: chr5:51125867-51125996 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 8-151
Cow position: chr5:39258647-39258511 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 117
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 52, 73

Conread position: 8-152
Cow position: chr5:26262537-26262672 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 52, 78

Conread position: 10-118
Cow position: chr5:54436893-54436783 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 10-122
Cow position: chr5:12738419-12738528 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 80

Conread position: 10-148
Cow position: chr5:7723805-7723670 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 101

Conread position: 10-151
Cow position: chr5:15364408-15364272 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 47, 65

Conread position: 10-151
Cow position: chr5:28224592-28224456 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 100, 0

Conread position: 10-151
Cow position: chr5:65679833-65679967 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 74

Conread position: 10-152
Cow position: chr5:35982597-35982736 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 50, 101

Conread position: 10-160
Cow position: chr5:2851730-2851591 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 50, 74

Conread position: 10-160
Cow position: chr5:14903928-14904075 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 47, 93

Conread position: 11-108
Cow position: chr5:38418655-38418558 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 83
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 46, 61

Conread position: 11-110
Cow position: chr5:16668836-16668736 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 86
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 11-110
Cow position: chr5:30638439-30638540 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 11-110
Cow position: chr5:51233880-51233980 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 11-120
Cow position: chr5:20882485-20882595 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 94
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 49, 0

Conread position: 11-121
Cow position: chr5:24915388-24915499 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 11-122
Cow position: chr5:54127429-54127316 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 11-124
Cow position: chr5:17644489-17644605 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 11-125
Cow position: chr5:36823022-36822913 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 49, 70

Conread position: 11-127
Cow position: chr5:38040425-38040540 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 46, 99

Conread position: 11-127
Cow position: chr5:65552578-65552687 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 11-136
Cow position: chr5:12902056-12901933 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 49, 100

Conread position: 11-147
Cow position: chr5:26723586-26723455 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 113
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 99, 0

Conread position: 11-148
Cow position: chr5:11769408-11769277 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 46, 87

Conread position: 11-149
Cow position: chr5:37808524-37808658 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 49, 100

Conread position: 11-149
Cow position: chr5:55756276-55756415 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 46, 120

Conread position: 11-150
Cow position: chr5:15471068-15470938 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 46, 70

Conread position: 11-150
Cow position: chr5:29771667-29771532 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 100

Conread position: 11-150
Cow position: chr5:43858281-43858415 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 70

Conread position: 11-150
Cow position: chr5:51490109-51490241 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 49, 100

Conread position: 11-150
Cow position: chr5:53855845-53855704 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 46, 99

Conread position: 11-150
Cow position: chr5:54350222-54350357 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 43

Conread position: 11-150
Cow position: chr5:64140677-64140539 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 46, 87

Conread position: 11-151
Cow position: chr5:458627-458492 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 49, 60

Conread position: 11-151
Cow position: chr5:2469073-2469204 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 44, 0

Conread position: 11-151
Cow position: chr5:3771985-3771853 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 86

Conread position: 11-151
Cow position: chr5:4280587-4280449 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 46, 99

Conread position: 11-151
Cow position: chr5:30805303-30805168 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 49, 76

Conread position: 11-151
Cow position: chr5:39937254-39937119 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 97

Conread position: 11-151
Cow position: chr5:43992463-43992327 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 120
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr5:54086677-54086544 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 49, 76

Conread position: 11-151
Cow position: chr5:54311475-54311339 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 46, 99

Conread position: 11-151
Cow position: chr5:59627239-59627103 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 46, 100

Conread position: 11-151
Cow position: chr5:63987307-63987442 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 117
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 49, 72

Conread position: 11-152
Cow position: chr5:11668046-11668183 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 49, 100

Conread position: 11-152
Cow position: chr5:35246971-35247108 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 118

Conread position: 11-152
Cow position: chr5:37646405-37646541 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 99, 0

Conread position: 11-152
Cow position: chr5:42064344-42064207 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 46, 100

Conread position: 11-152
Cow position: chr5:47323601-47323465 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 118
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 49, 100

Conread position: 11-152
Cow position: chr5:50575922-50575786 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 67, 72

Conread position: 11-152
Cow position: chr5:53710550-53710687 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 46, 100

Conread position: 11-152
Cow position: chr5:54767770-54767906 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 46, 99

Conread position: 11-152
Cow position: chr5:55965755-55965892 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 49, 99

Conread position: 11-162
Cow position: chr5:60948271-60948126 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 74

Conread position: 12-148
Cow position: chr5:58555276-58555143 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 115
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 7, 100

Conread position: 12-150
Cow position: chr5:57230200-57230334 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 48, 99

Conread position: 12-151
Cow position: chr5:26476880-26477014 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 45, 99

Conread position: 12-151
Cow position: chr5:55019430-55019295 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 99

Conread position: 12-151
Cow position: chr5:55795828-55795964 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 48, 100

Conread position: 12-152
Cow position: chr5:58446945-58446809 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 97

Conread position: 14-149
Cow position: chr5:6528821-6528688 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 37, 98

Conread position: 14-151
Cow position: chr5:4267806-4267673 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 114
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 46, 97

Conread position: 14-151
Cow position: chr5:62142812-62142679 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 46, 97

Conread position: 19-150
Cow position: chr5:64758636-64758763 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 41, 92

Conread position: 19-151
Cow position: chr5:12247607-12247734 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 100, 0

Show alignments to all cow chromosomes.