Cow genome map

Conread name: rfbs3925b_b18.y1

Conread position: 4-149
Cow position: chr9:42478573-42478432 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 53, 107

Conread position: 5-118
Cow position: chr9:18003282-18003167 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 8, 59

Conread position: 5-126
Cow position: chr9:34707403-34707282 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 8, 107

Conread position: 5-127
Cow position: chr9:7101355-7101473 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 5-145
Cow position: chr9:39758428-39758564 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 55, 105

Conread position: 5-149
Cow position: chr9:21292500-21292357 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 8, 101

Conread position: 5-149
Cow position: chr9:38941524-38941382 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 8, 108

Conread position: 5-150
Cow position: chr9:25400289-25400150 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 122
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 13, 77

Conread position: 5-150
Cow position: chr9:58662154-58662290 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 55, 72

Conread position: 5-151
Cow position: chr9:5433542-5433684 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 106

Conread position: 5-151
Cow position: chr9:22443718-22443575 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 120
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 8, 107

Conread position: 5-151
Cow position: chr9:28354425-28354570 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 124
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 8, 100

Conread position: 5-151
Cow position: chr9:31098977-31098832 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 120
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 8, 106

Conread position: 5-151
Cow position: chr9:38846424-38846285 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 9, 83

Conread position: 5-151
Cow position: chr9:42446074-42445931 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 120
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 8, 107

Conread position: 5-151
Cow position: chr9:51566587-51566443 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 121
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 8, 108

Conread position: 5-151
Cow position: chr9:54716692-54716554 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 52, 80

Conread position: 5-152
Cow position: chr9:5650064-5649921 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 6, 86

Conread position: 5-152
Cow position: chr9:59386859-59386715 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 55, 105

Conread position: 6-151
Cow position: chr9:54677173-54677309 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 91

Conread position: 7-152
Cow position: chr9:41282927-41283068 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 125
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 53, 105

Conread position: 8-122
Cow position: chr9:2951595-2951479 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 8-149
Cow position: chr9:37069645-37069507 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 52, 9

Conread position: 8-150
Cow position: chr9:50310848-50310715 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 64

Conread position: 8-151
Cow position: chr9:11304162-11304027 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 52, 83

Conread position: 8-151
Cow position: chr9:56011412-56011551 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 51, 103

Conread position: 9-151
Cow position: chr9:4580490-4580352 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 48, 102

Conread position: 9-151
Cow position: chr9:11168644-11168782 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 51, 102

Conread position: 10-111
Cow position: chr9:34917270-34917167 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 90
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 10-150
Cow position: chr9:42062014-42062152 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 50, 119

Conread position: 10-151
Cow position: chr9:5110773-5110910 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 45, 101

Conread position: 10-151
Cow position: chr9:5594418-5594555 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 50, 101

Conread position: 10-151
Cow position: chr9:6839908-6840045 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 47, 101

Conread position: 10-151
Cow position: chr9:15225381-15225244 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 50, 101

Conread position: 10-151
Cow position: chr9:19902998-19903134 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 9

Conread position: 11-103
Cow position: chr9:34423537-34423631 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 81
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 11-107
Cow position: chr9:41716357-41716454 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 11-118
Cow position: chr9:35403499-35403605 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 91

Conread position: 11-120
Cow position: chr9:3847318-3847428 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 11-129
Cow position: chr9:32089304-32089422 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 101

Conread position: 11-142
Cow position: chr9:36457915-36458044 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 46, 117

Conread position: 11-145
Cow position: chr9:24243807-24243675 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 49, 102

Conread position: 11-147
Cow position: chr9:55084385-55084256 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 57

Conread position: 11-149
Cow position: chr9:4630020-4630153 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 46, 79

Conread position: 11-149
Cow position: chr9:5342331-5342198 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 49, 67

Conread position: 11-149
Cow position: chr9:8337943-8338077 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 47, 113

Conread position: 11-149
Cow position: chr9:18217183-18217049 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 117
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 49, 100

Conread position: 11-149
Cow position: chr9:31814470-31814335 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 101

Conread position: 11-149
Cow position: chr9:52598805-52598671 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 100

Conread position: 11-150
Cow position: chr9:5219256-5219119 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 117

Conread position: 11-150
Cow position: chr9:41964818-41964684 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 116
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 99, 0

Conread position: 11-150
Cow position: chr9:43342247-43342380 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 118
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 49, 100

Conread position: 11-150
Cow position: chr9:55321553-55321688 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 110
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 46, 100

Conread position: 11-151
Cow position: chr9:7806045-7805909 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 119
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 49, 98

Conread position: 11-151
Cow position: chr9:8992264-8992127 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 119
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 29, 99

Conread position: 11-151
Cow position: chr9:17518573-17518437 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr9:19713996-19714132 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr9:22696139-22696274 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 46, 57

Conread position: 11-151
Cow position: chr9:38645428-38645294 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 49, 59

Conread position: 11-151
Cow position: chr9:39681255-39681391 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 46, 100

Conread position: 11-151
Cow position: chr9:43443720-43443853 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 39, 71

Conread position: 11-151
Cow position: chr9:43870891-43871027 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 49, 100

Conread position: 11-151
Cow position: chr9:50139201-50139339 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 118

Conread position: 11-151
Cow position: chr9:50977337-50977192 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 46, 127

Conread position: 11-151
Cow position: chr9:54528430-54528564 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 79

Conread position: 11-151
Cow position: chr9:58369080-58368945 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 49, 84

Conread position: 11-151
Cow position: chr9:62459283-62459417 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 64

Conread position: 11-151
Cow position: chr9:63784998-63784862 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 46, 100

Conread position: 11-151
Cow position: chr9:64050645-64050510 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 46, 99

Conread position: 11-151
Cow position: chr9:64064447-64064311 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 49, 100

Conread position: 11-152
Cow position: chr9:9311774-9311911 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 44, 100

Conread position: 11-152
Cow position: chr9:26279253-26279116 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 99

Conread position: 11-152
Cow position: chr9:35105874-35105737 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 46, 100

Conread position: 11-152
Cow position: chr9:51720981-51720848 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 49, 100

Conread position: 11-152
Cow position: chr9:55287973-55287839 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 73

Conread position: 11-167
Cow position: chr9:54051693-54051841 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 126
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 46, 69

Conread position: 11-168
Cow position: chr9:1729758-1729605 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 46, 100

Conread position: 11-171
Cow position: chr9:50118056-50117902 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 87, 44

Conread position: 11-193
Cow position: chr9:56827392-56827579 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 49, 121

Conread position: 12-128
Cow position: chr9:11427576-11427695 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 100
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 12-146
Cow position: chr9:39148995-39149126 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 6, 102

Conread position: 12-149
Cow position: chr9:32670030-32669897 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 45, 99

Conread position: 12-151
Cow position: chr9:11123566-11123433 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 43, 59

Conread position: 12-151
Cow position: chr9:13846210-13846075 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 99

Conread position: 12-151
Cow position: chr9:50081123-50080988 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 48, 105

Conread position: 12-152
Cow position: chr9:17411276-17411140 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 116
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 53, 100

Conread position: 12-160
Cow position: chr9:5245770-5245914 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 43, 99

Conread position: 13-145
Cow position: chr9:5757071-5756942 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 111
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 15, 99

Conread position: 13-146
Cow position: chr9:34014331-34014202 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 110
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 47, 98

Conread position: 13-150
Cow position: chr9:34888376-34888247 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 47, 70

Conread position: 13-150
Cow position: chr9:52839961-52839830 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 7, 0

Conread position: 13-151
Cow position: chr9:9443683-9443552 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 47, 101

Conread position: 13-151
Cow position: chr9:26403703-26403837 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 44, 98

Conread position: 13-151
Cow position: chr9:33597904-33598038 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 44, 100

Conread position: 13-166
Cow position: chr9:5072915-5072770 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 138, 39

Conread position: 14-151
Cow position: chr9:26859274-26859400 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 73

Conread position: 15-151
Cow position: chr9:33347570-33347438 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 45, 96

Show alignments to all cow chromosomes.