Cow genome map

Conread name: rfbs3925b_o12.y1

Conread position: 1-163
Cow position: chr1:61241779-61241942 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 92, 57

Conread position: 1-188
Cow position: chr1:1825813-1825992 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 57, 75

Conread position: 1-191
Cow position: chr1:60260646-60260831 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 133
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 1-191
Cow position: chr1:82865265-82865447 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 57, 9

Conread position: 1-193
Cow position: chr1:84152530-84152724 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 57, 147

Conread position: 1-205
Cow position: chr1:22516576-22516778 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 158
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 57, 146

Conread position: 1-206
Cow position: chr1:86325574-86325375 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 57, 95

Conread position: 1-207
Cow position: chr1:54162773-54162571 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 54, 139

Conread position: 1-207
Cow position: chr1:72181836-72182037 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 157
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 54, 70

Conread position: 1-220
Cow position: chr1:42174557-42174340 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 57, 140

Conread position: 1-242
Cow position: chr1:23624194-23624423 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 189
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 57, 69

Conread position: 1-245
Cow position: chr1:81371659-81371426 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 184
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 57, 20

Conread position: 1-314
Cow position: chr1:40223005-40222709 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 223
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 57, 119

Conread position: 1-324
Cow position: chr1:11879136-11878832 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 65

Conread position: 1-330
Cow position: chr1:52206711-52207027 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 135

Conread position: 1-342
Cow position: chr1:27545843-27546166 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 228
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 60, 140

Conread position: 1-370
Cow position: chr1:22495577-22495941 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 24

Conread position: 1-385
Cow position: chr1:76780424-76780034 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 147

Conread position: 1-419
Cow position: chr1:30041768-30042156 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 81

Conread position: 1-438
Cow position: chr1:34892590-34893010 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 165

Conread position: 1-438
Cow position: chr1:64479943-64479519 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 70

Conread position: 1-438
Cow position: chr1:71555756-71555358 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 81

Conread position: 1-441
Cow position: chr1:64099246-64098835 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 139

Conread position: 1-441
Cow position: chr1:74713490-74713908 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 24

Conread position: 1-441
Cow position: chr1:85409837-85409421 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 45

Conread position: 1-441
Cow position: chr1:87914930-87914510 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 90

Conread position: 1-441
Cow position: chr1:92551113-92550669 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 17

Conread position: 2-192
Cow position: chr1:40161248-40161434 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 9, 139

Conread position: 2-441
Cow position: chr1:40164274-40164686 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 139

Conread position: 4-198
Cow position: chr1:57646703-57646890 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 54, 136

Conread position: 4-277
Cow position: chr1:19439988-19439727 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 49

Conread position: 5-420
Cow position: chr1:18223833-18223444 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 0

Conread position: 8-438
Cow position: chr1:39244540-39244107 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 133

Conread position: 11-434
Cow position: chr1:82573203-82572804 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 69

Conread position: 22-200
Cow position: chr1:28680077-28680248 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 136
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 18, 118

Conread position: 22-244
Cow position: chr1:22070310-22070522 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 172
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 36, 119

Conread position: 22-327
Cow position: chr1:63133678-63133972 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 62

Conread position: 22-431
Cow position: chr1:49727924-49728318 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 31

Conread position: 24-318
Cow position: chr1:69061292-69061563 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 34, 69

Conread position: 24-359
Cow position: chr1:11831335-11831645 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 245
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 34, 15

Conread position: 24-438
Cow position: chr1:102556644-102557025 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 284
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 69, 116

Conread position: 39-206
Cow position: chr1:33084928-33084768 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 19, 99

Conread position: 58-310
Cow position: chr1:45977993-45978235 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 177
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 40, 84

Conread position: 62-322
Cow position: chr1:77755867-77755625 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 194
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 35, 77

Conread position: 66-428
Cow position: chr1:24222424-24222788 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 251
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 131, 21

Conread position: 72-433
Cow position: chr1:31233249-31232901 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 66

Conread position: 100-430
Cow position: chr1:85351-85668 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 243
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 99, 38

Conread position: 146-424
Cow position: chr1:58882155-58881879 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 190
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 108

Conread position: 153-415
Cow position: chr1:34311004-34311253 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 92, 12

Conread position: 156-336
Cow position: chr1:2296532-2296704 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 65, 44

Conread position: 162-441
Cow position: chr1:25885925-25885658 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 200
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 14, 41

Conread position: 177-438
Cow position: chr1:3750095-3750343 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 24

Conread position: 181-438
Cow position: chr1:61241916-61242160 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 186-430
Cow position: chr1:28512452-28512209 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 186
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 34, 67

Conread position: 187-435
Cow position: chr1:6985645-6985395 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 31, 110

Conread position: 188-435
Cow position: chr1:23887159-23887400 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 27, 78

Conread position: 190-413
Cow position: chr1:92048730-92048959 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 13

Conread position: 190-416
Cow position: chr1:86709124-86708896 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 162
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 58

Conread position: 190-438
Cow position: chr1:56858421-56858667 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 24, 65

Conread position: 190-438
Cow position: chr1:57077200-57077449 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 181
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 15, 46

Conread position: 196-378
Cow position: chr1:69290326-69290504 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 84

Conread position: 196-423
Cow position: chr1:99858133-99858353 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 23, 9

Conread position: 196-424
Cow position: chr1:22774439-22774210 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 23, 75

Conread position: 196-430
Cow position: chr1:21276843-21276621 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 164
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 23, 54

Conread position: 196-441
Cow position: chr1:41092974-41092726 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 181
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 19, 196

Conread position: 197-426
Cow position: chr1:57743114-57742874 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 169
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 22, 225

Conread position: 200-385
Cow position: chr1:14560325-14560144 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 142
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 14, 0

Conread position: 201-356
Cow position: chr1:80329831-80329678 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 14, 52

Conread position: 201-424
Cow position: chr1:58341507-58341729 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 160
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 8, 93

Conread position: 201-437
Cow position: chr1:44376844-44377079 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 164
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 190, 65

Conread position: 206-431
Cow position: chr1:79915430-79915657 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 13, 60

Conread position: 214-401
Cow position: chr1:69204058-69203862 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 47, 83

Conread position: 214-441
Cow position: chr1:3020558-3020333 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 177, 41

Conread position: 216-441
Cow position: chr1:2599499-2599279 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 67, 38

Conread position: 217-438
Cow position: chr1:90370718-90370505 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 174, 33

Conread position: 218-424
Cow position: chr1:76223788-76223583 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 173, 25

Conread position: 223-439
Cow position: chr1:56233112-56233320 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 30, 0

Conread position: 232-398
Cow position: chr1:75126214-75126056 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 246-432
Cow position: chr1:13245820-13245636 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 76

Conread position: 250-397
Cow position: chr1:47371214-47371361 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 12, 35

Conread position: 252-424
Cow position: chr1:61790815-61790632 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 95, 37

Conread position: 255-438
Cow position: chr1:88017567-88017389 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 137, 18

Conread position: 257-438
Cow position: chr1:101883877-101884058 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 133, 32

Conread position: 260-441
Cow position: chr1:65155511-65155330 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 147
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 131, 29

Conread position: 264-441
Cow position: chr1:81292751-81292927 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 163, 25

Conread position: 271-424
Cow position: chr1:84778135-84778287 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 7, 19

Conread position: 272-432
Cow position: chr1:9511996-9511843 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 119, 16

Conread position: 285-441
Cow position: chr1:19439506-19439350 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 109, 143

Conread position: 308-439
Cow position: chr1:11831634-11831761 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 89, 21

Show alignments to all cow chromosomes.