Cow genome map
| Conread name: | rfbs3925b_o12.y1 |
| Conread position: | 1-177 |
| Cow position: | chr10:22843687-22843859 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 56, 139 |
| Conread position: | 1-244 |
| Cow position: | chr10:41637650-41637881 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 1-251 |
| Cow position: | chr10:12875810-12875575 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 57, 67 |
| Conread position: | 1-331 |
| Cow position: | chr10:45650675-45650975 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 57, 35 |
| Conread position: | 1-336 |
| Cow position: | chr10:28566247-28565917 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 140 |
| Conread position: | 1-336 |
| Cow position: | chr10:57404932-57404602 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 203, 94 |
| Conread position: | 1-356 |
| Cow position: | chr10:1351933-1352283 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 116 |
| Conread position: | 1-357 |
| Cow position: | chr10:31219998-31220364 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 57 |
| Conread position: | 1-377 |
| Cow position: | chr10:22860156-22859792 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 55 |
| Conread position: | 1-405 |
| Cow position: | chr10:43061111-43060706 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 59 |
| Conread position: | 1-416 |
| Cow position: | chr10:69250515-69250931 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 94, 57 |
| Conread position: | 1-423 |
| Cow position: | chr10:36303848-36303404 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 23, 66 |
| Conread position: | 1-430 |
| Cow position: | chr10:767776-767377 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 97 |
| Conread position: | 1-438 |
| Cow position: | chr10:3317861-3318298 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 141 |
| Conread position: | 1-438 |
| Cow position: | chr10:11275651-11276090 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 141 |
| Conread position: | 1-438 |
| Cow position: | chr10:16669365-16668925 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 1-438 |
| Cow position: | chr10:48193679-48193278 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 57, 122 |
| Conread position: | 1-439 |
| Cow position: | chr10:68204094-68203666 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 1-441 |
| Cow position: | chr10:37428676-37428260 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 2-207 |
| Cow position: | chr10:48313071-48312870 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 83 |
| Conread position: | 3-278 |
| Cow position: | chr10:15618769-15618496 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 135 |
| Conread position: | 4-196 |
| Cow position: | chr10:41395464-41395651 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 60 |
| Conread position: | 5-435 |
| Cow position: | chr10:22455199-22455614 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 22-360 |
| Cow position: | chr10:4994543-4994203 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 39, 60 |
| Conread position: | 46-379 |
| Cow position: | chr10:48208741-48208426 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 58-440 |
| Cow position: | chr10:38472255-38472631 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 61-191 |
| Cow position: | chr10:64074343-64074218 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 32, 78 |
| Conread position: | 63-438 |
| Cow position: | chr10:23880091-23879734 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 34 |
| Conread position: | 73-418 |
| Cow position: | chr10:25257703-25258017 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 69 |
| Conread position: | 91-433 |
| Cow position: | chr10:12199095-12199431 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 98-356 |
| Cow position: | chr10:60243062-60243308 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 117, 40 |
| Conread position: | 152-431 |
| Cow position: | chr10:1328348-1328064 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 42, 86 |
| Conread position: | 153-438 |
| Cow position: | chr10:53375132-53374869 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 160-438 |
| Cow position: | chr10:27222923-27223191 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 40 |
| Conread position: | 164-424 |
| Cow position: | chr10:17923171-17923429 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 189-418 |
| Cow position: | chr10:39245050-39244821 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 86 |
| Conread position: | 189-424 |
| Cow position: | chr10:27132836-27132593 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 16, 108 |
| Conread position: | 189-424 |
| Cow position: | chr10:29291075-29291319 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 67 |
| Conread position: | 190-398 |
| Cow position: | chr10:60910111-60909906 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 190-438 |
| Cow position: | chr10:52342599-52342854 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 191-398 |
| Cow position: | chr10:22448338-22448137 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 191-441 |
| Cow position: | chr10:47583876-47584117 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 232, 10 |
| Conread position: | 191-441 |
| Cow position: | chr10:50141341-50141096 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 20, 63 |
| Conread position: | 192-441 |
| Cow position: | chr10:60688168-60687928 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 196-430 |
| Cow position: | chr10:54825100-54824867 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 201-345 |
| Cow position: | chr10:63621830-63621692 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 201-432 |
| Cow position: | chr10:2711567-2711323 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 47, 200 |
| Conread position: | 201-438 |
| Cow position: | chr10:17415698-17415467 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 59, 12 |
| Conread position: | 218-424 |
| Cow position: | chr10:46000233-46000033 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 218-437 |
| Cow position: | chr10:36425194-36424972 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 177, 76 |
| Conread position: | 223-438 |
| Cow position: | chr10:15824320-15824107 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 90, 29 |
| Conread position: | 252-435 |
| Cow position: | chr10:3854976-3855152 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 143, 41 |
| Conread position: | 254-424 |
| Cow position: | chr10:7614618-7614780 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 137, 34 |
| Conread position: | 259-438 |
| Cow position: | chr10:19128559-19128383 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 265-424 |
| Cow position: | chr10:41085204-41085360 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 265-424 |
| Cow position: | chr10:50015213-50015055 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 265-441 |
| Cow position: | chr10:17745370-17745538 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 150, 18 |
| Conread position: | 266-401 |
| Cow position: | chr10:62629270-62629404 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 125, 22 |
| Conread position: | 279-438 |
| Cow position: | chr10:35181955-35182107 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 142, 10 |
| Conread position: | 285-438 |
| Cow position: | chr10:15618168-15618020 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 299-438 |
| Cow position: | chr10:24609062-24609204 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 47, 90 |
| Conread position: | 310-438 |
| Cow position: | chr10:37092795-37092668 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 47, 13 |
Show alignments to all cow chromosomes.