Cow genome map
| Conread name: | rfbs3925b_o12.y1 |
| Conread position: | 1-135 |
| Cow position: | chr11:43831789-43831653 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 57, 134 |
| Conread position: | 1-147 |
| Cow position: | chr11:33103648-33103498 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-191 |
| Cow position: | chr11:17192272-17192087 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 57, 40 |
| Conread position: | 1-196 |
| Cow position: | chr11:12790808-12790994 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 68 |
| Conread position: | 1-198 |
| Cow position: | chr11:25972907-25972714 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 57, 147 |
| Conread position: | 1-301 |
| Cow position: | chr11:1775031-1774739 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 57, 85 |
| Conread position: | 1-392 |
| Cow position: | chr11:51177498-51177860 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-394 |
| Cow position: | chr11:52859463-52859852 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 141 |
| Conread position: | 1-396 |
| Cow position: | chr11:9423919-9424303 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 9 |
| Conread position: | 1-430 |
| Cow position: | chr11:77756755-77756337 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 39 |
| Conread position: | 1-435 |
| Cow position: | chr11:5221426-5221000 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 140 |
| Conread position: | 1-435 |
| Cow position: | chr11:35251987-35251560 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 68 |
| Conread position: | 1-435 |
| Cow position: | chr11:57061882-57062292 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 303 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 57, 44 |
| Conread position: | 1-438 |
| Cow position: | chr11:24008086-24008529 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 75 |
| Conread position: | 1-438 |
| Cow position: | chr11:25856192-25856624 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 121 |
| Conread position: | 1-438 |
| Cow position: | chr11:40574757-40574340 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 37 |
| Conread position: | 1-438 |
| Cow position: | chr11:77772681-77772265 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 79 |
| Conread position: | 1-441 |
| Cow position: | chr11:10877258-10877686 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 20 |
| Conread position: | 1-441 |
| Cow position: | chr11:18154248-18153811 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 143 |
| Conread position: | 1-441 |
| Cow position: | chr11:55119489-55119904 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 1-441 |
| Cow position: | chr11:69491424-69491851 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 135 |
| Conread position: | 3-430 |
| Cow position: | chr11:39831215-39830801 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 27 |
| Conread position: | 8-273 |
| Cow position: | chr11:7130956-7131215 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 10-241 |
| Cow position: | chr11:87169605-87169372 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 47, 134 |
| Conread position: | 22-207 |
| Cow position: | chr11:23738761-23738580 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 36, 118 |
| Conread position: | 32-381 |
| Cow position: | chr11:34024599-34024943 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 38-320 |
| Cow position: | chr11:60822689-60822417 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 216 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 20, 58 |
| Conread position: | 39-438 |
| Cow position: | chr11:25807699-25807309 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 81 |
| Conread position: | 40-225 |
| Cow position: | chr11:56962612-56962428 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 17, 108 |
| Conread position: | 56-438 |
| Cow position: | chr11:22851096-22851471 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 61-431 |
| Cow position: | chr11:21893405-21893060 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 61-438 |
| Cow position: | chr11:82528938-82529292 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 80 |
| Conread position: | 72-438 |
| Cow position: | chr11:57153588-57153232 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 68 |
| Conread position: | 75-438 |
| Cow position: | chr11:34303541-34303898 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 66 |
| Conread position: | 80-433 |
| Cow position: | chr11:34761632-34761306 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 60 |
| Conread position: | 84-418 |
| Cow position: | chr11:57753302-57752968 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 57 |
| Conread position: | 84-435 |
| Cow position: | chr11:77763416-77763085 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 15, 52 |
| Conread position: | 146-431 |
| Cow position: | chr11:60398690-60398412 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 73, 57 |
| Conread position: | 149-314 |
| Cow position: | chr11:35283985-35284147 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 150-419 |
| Cow position: | chr11:77820122-77819865 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 152-425 |
| Cow position: | chr11:21544196-21544465 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 154-441 |
| Cow position: | chr11:43831653-43831369 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 159-438 |
| Cow position: | chr11:34397638-34397908 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 87, 38 |
| Conread position: | 162-393 |
| Cow position: | chr11:55354529-55354301 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 57, 83 |
| Conread position: | 162-403 |
| Cow position: | chr11:34265557-34265795 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 84, 28 |
| Conread position: | 177-424 |
| Cow position: | chr11:27666320-27666064 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 42, 122 |
| Conread position: | 180-441 |
| Cow position: | chr11:18452963-18452712 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 185-438 |
| Cow position: | chr11:8087975-8087728 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 190-428 |
| Cow position: | chr11:29014267-29014509 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 8, 106 |
| Conread position: | 191-405 |
| Cow position: | chr11:17737501-17737715 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 23, 65 |
| Conread position: | 191-424 |
| Cow position: | chr11:80002911-80003147 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 191-437 |
| Cow position: | chr11:81337091-81336853 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 21, 29 |
| Conread position: | 193-434 |
| Cow position: | chr11:58793812-58793580 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 22, 60 |
| Conread position: | 201-424 |
| Cow position: | chr11:77193838-77193617 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 191, 13 |
| Conread position: | 204-363 |
| Cow position: | chr11:26369260-26369099 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 216-424 |
| Cow position: | chr11:13573861-13573656 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 205, 73 |
| Conread position: | 240-441 |
| Cow position: | chr11:15885532-15885728 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 80, 10 |
| Conread position: | 241-438 |
| Cow position: | chr11:74171377-74171186 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 254-438 |
| Cow position: | chr11:12791021-12791204 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 134, 40 |
| Conread position: | 255-433 |
| Cow position: | chr11:80269595-80269420 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 261-435 |
| Cow position: | chr11:84729194-84729365 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 129, 33 |
| Conread position: | 265-441 |
| Cow position: | chr11:29785359-29785546 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 80, 24 |
| Conread position: | 269-390 |
| Cow position: | chr11:30660451-30660571 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 269-424 |
| Cow position: | chr11:58579871-58580027 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 123, 20 |
| Conread position: | 269-441 |
| Cow position: | chr11:12064971-12065143 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 151, 15 |
| Conread position: | 285-438 |
| Cow position: | chr11:1774617-1774458 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 126 |
| Conread position: | 285-439 |
| Cow position: | chr11:9144653-9144502 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 289-424 |
| Cow position: | chr11:70605660-70605797 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 294-438 |
| Cow position: | chr11:77713371-77713226 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 309-438 |
| Cow position: | chr11:44064181-44064313 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 311-440 |
| Cow position: | chr11:43855928-43855797 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 81, 54 |
| Conread position: | 336-438 |
| Cow position: | chr11:60511752-60511647 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.