Cow genome map
| Conread name: | rfbs3925b_o12.y1 |
| Conread position: | 1-197 |
| Cow position: | chr13:46349542-46349732 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 1-199 |
| Cow position: | chr13:43384665-43384863 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 1-202 |
| Cow position: | chr13:22277218-22277414 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 47, 95 |
| Conread position: | 1-284 |
| Cow position: | chr13:38362243-38361972 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 59, 99 |
| Conread position: | 1-435 |
| Cow position: | chr13:38535347-38534942 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 299 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 55, 95 |
| Conread position: | 1-435 |
| Cow position: | chr13:45497290-45497728 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 138 |
| Conread position: | 1-438 |
| Cow position: | chr13:12325143-12325551 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 140 |
| Conread position: | 1-438 |
| Cow position: | chr13:34265050-34264643 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 31 |
| Conread position: | 1-438 |
| Cow position: | chr13:55406698-55407119 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 137 |
| Conread position: | 1-441 |
| Cow position: | chr13:39487367-39487788 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 3-374 |
| Cow position: | chr13:37497770-37498115 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 15 |
| Conread position: | 4-134 |
| Cow position: | chr13:34931328-34931456 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 54, 77 |
| Conread position: | 15-438 |
| Cow position: | chr13:19115473-19115867 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 15 |
| Conread position: | 23-438 |
| Cow position: | chr13:34885023-34885431 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 46 |
| Conread position: | 39-438 |
| Cow position: | chr13:46464746-46464372 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 51-309 |
| Cow position: | chr13:11441434-11441676 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 25, 91 |
| Conread position: | 59-435 |
| Cow position: | chr13:34336357-34336700 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 53 |
| Conread position: | 76-357 |
| Cow position: | chr13:30951574-30951313 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 94-438 |
| Cow position: | chr13:47325775-47325434 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 44 |
| Conread position: | 94-438 |
| Cow position: | chr13:51240857-51241178 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 44 |
| Conread position: | 96-319 |
| Cow position: | chr13:59997899-59997688 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 96-373 |
| Cow position: | chr13:62271996-62271740 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 98-305 |
| Cow position: | chr13:698298-698504 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 94, 27 |
| Conread position: | 106-438 |
| Cow position: | chr13:25955478-25955169 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 289, 34 |
| Conread position: | 117-432 |
| Cow position: | chr13:17169350-17169643 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 98, 23 |
| Conread position: | 144-438 |
| Cow position: | chr13:28605571-28605870 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 149-435 |
| Cow position: | chr13:44144238-44143956 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 52 |
| Conread position: | 153-370 |
| Cow position: | chr13:15489598-15489805 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 40, 49 |
| Conread position: | 157-438 |
| Cow position: | chr13:24404186-24403918 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 162-441 |
| Cow position: | chr13:33239690-33239974 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 34, 97 |
| Conread position: | 163-441 |
| Cow position: | chr13:21878498-21878223 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 38 |
| Conread position: | 165-381 |
| Cow position: | chr13:18839113-18839323 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 179-441 |
| Cow position: | chr13:43848895-43848641 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 181-336 |
| Cow position: | chr13:17910299-17910453 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 6 |
| Conread position: | 186-404 |
| Cow position: | chr13:4519135-4518922 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 18, 69 |
| Conread position: | 186-424 |
| Cow position: | chr13:11570789-11570553 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 14 |
| Conread position: | 187-434 |
| Cow position: | chr13:4546454-4546200 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 20, 97 |
| Conread position: | 187-441 |
| Cow position: | chr13:30835939-30836184 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 188-432 |
| Cow position: | chr13:15731358-15731117 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 188-437 |
| Cow position: | chr13:46131807-46131562 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 13 |
| Conread position: | 190-415 |
| Cow position: | chr13:21826376-21826582 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 198, 10 |
| Conread position: | 190-429 |
| Cow position: | chr13:7804078-7803841 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 19, 63 |
| Conread position: | 191-424 |
| Cow position: | chr13:17127546-17127313 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 71 |
| Conread position: | 191-441 |
| Cow position: | chr13:50661943-50662190 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 24, 93 |
| Conread position: | 192-431 |
| Cow position: | chr13:57746024-57746267 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 9, 228 |
| Conread position: | 192-441 |
| Cow position: | chr13:43803132-43803381 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 23, 75 |
| Conread position: | 198-355 |
| Cow position: | chr13:28590269-28590433 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 18, 101 |
| Conread position: | 201-433 |
| Cow position: | chr13:20656546-20656777 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 14, 55 |
| Conread position: | 201-439 |
| Cow position: | chr13:26943017-26943263 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 19, 91 |
| Conread position: | 204-438 |
| Cow position: | chr13:14080234-14079993 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 12, 95 |
| Conread position: | 214-431 |
| Cow position: | chr13:43385028-43385243 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 59, 101 |
| Conread position: | 214-441 |
| Cow position: | chr13:24675891-24676120 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 33, 54 |
| Conread position: | 217-424 |
| Cow position: | chr13:51142774-51142574 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 178, 18 |
| Conread position: | 218-430 |
| Cow position: | chr13:6178300-6178510 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 175, 61 |
| Conread position: | 235-394 |
| Cow position: | chr13:7310809-7310651 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 238-427 |
| Cow position: | chr13:51682094-51682286 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 53 |
| Conread position: | 240-424 |
| Cow position: | chr13:1367521-1367339 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 240-440 |
| Cow position: | chr13:11223161-11222970 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 180, 11 |
| Conread position: | 253-418 |
| Cow position: | chr13:47280011-47279843 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 68, 36 |
| Conread position: | 256-432 |
| Cow position: | chr13:27844136-27843967 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 144, 17 |
| Conread position: | 258-435 |
| Cow position: | chr13:5619405-5619228 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 137, 11 |
| Conread position: | 284-441 |
| Cow position: | chr13:4796124-4796286 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 81, 149 |
| Conread position: | 294-441 |
| Cow position: | chr13:10854705-10854562 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 311-441 |
| Cow position: | chr13:18597037-18596905 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 80, 129 |
| Conread position: | 323-432 |
| Cow position: | chr13:22193750-22193857 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.