Cow genome map

Conread name: rfbs3925b_o12.y1

Conread position: 1-140
Cow position: chr15:21802104-21802246 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 58, 0

Conread position: 1-164
Cow position: chr15:5912731-5912568 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 57, 29

Conread position: 1-191
Cow position: chr15:39288378-39288190 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 57, 139

Conread position: 1-198
Cow position: chr15:14811500-14811317 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 146
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 1-284
Cow position: chr15:40065627-40065907 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 140

Conread position: 1-326
Cow position: chr15:31918277-31917981 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 235
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 57, 92

Conread position: 1-393
Cow position: chr15:9072376-9072766 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 147

Conread position: 1-414
Cow position: chr15:10581093-10581498 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 126

Conread position: 1-418
Cow position: chr15:37491999-37491609 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 54

Conread position: 1-438
Cow position: chr15:44797593-44797152 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 140

Conread position: 1-438
Cow position: chr15:52868524-52868931 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 302
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 98, 47

Conread position: 1-441
Cow position: chr15:23265477-23265892 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 14

Conread position: 1-441
Cow position: chr15:25683381-25683813 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 140

Conread position: 2-127
Cow position: chr15:11289132-11289010 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 106
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 5, 17

Conread position: 2-437
Cow position: chr15:37470269-37469851 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 26

Conread position: 2-439
Cow position: chr15:53712531-53712951 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 39

Conread position: 11-441
Cow position: chr15:6523729-6523331 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 300
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 82, 69

Conread position: 17-229
Cow position: chr15:4623530-4623323 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 41, 68

Conread position: 22-441
Cow position: chr15:17641917-17642314 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 116

Conread position: 28-215
Cow position: chr15:14974465-14974283 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 142
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 30, 112

Conread position: 30-418
Cow position: chr15:11997456-11997842 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 110

Conread position: 31-435
Cow position: chr15:27972053-27971664 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 50

Conread position: 39-198
Cow position: chr15:35041812-35041968 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 8, 103

Conread position: 54-429
Cow position: chr15:53728530-53728172 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 63

Conread position: 96-339
Cow position: chr15:50243104-50243327 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 175
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 88, 41

Conread position: 157-432
Cow position: chr15:578889-579166 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 45

Conread position: 160-441
Cow position: chr15:12048898-12048620 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 205
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 61, 41

Conread position: 164-431
Cow position: chr15:1887919-1888180 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 201
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 44, 23

Conread position: 181-441
Cow position: chr15:16669570-16669308 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 202
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 22, 82

Conread position: 189-441
Cow position: chr15:35042253-35042498 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 193
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 202, 16

Conread position: 190-438
Cow position: chr15:14811061-14810813 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 26, 11

Conread position: 191-411
Cow position: chr15:2436987-2437198 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 170, 8

Conread position: 191-427
Cow position: chr15:35739767-35740003 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 28, 56

Conread position: 192-414
Cow position: chr15:41344190-41343975 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 23, 64

Conread position: 192-414
Cow position: chr15:45665507-45665731 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 23, 40

Conread position: 201-323
Cow position: chr15:11287589-11287473 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 52, 13

Conread position: 201-393
Cow position: chr15:14974233-14974039 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 55, 68

Conread position: 201-426
Cow position: chr15:42116598-42116374 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 73, 13

Conread position: 201-438
Cow position: chr15:49271832-49272049 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 195, 8

Conread position: 204-441
Cow position: chr15:31855352-31855579 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 12, 52

Conread position: 212-433
Cow position: chr15:30570030-30570245 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 167
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 36, 12

Conread position: 214-431
Cow position: chr15:26365315-26365523 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 159
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 209, 33

Conread position: 214-438
Cow position: chr15:38902562-38902352 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 206, 75

Conread position: 214-441
Cow position: chr15:19813600-19813385 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 203, 36

Conread position: 215-418
Cow position: chr15:1233766-1233560 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 155, 70

Conread position: 215-418
Cow position: chr15:1241116-1240910 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 145
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 155, 70

Conread position: 245-441
Cow position: chr15:34551850-34552047 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 65, 45

Conread position: 253-424
Cow position: chr15:51637580-51637409 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 121
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 142, 36

Conread position: 255-433
Cow position: chr15:26866786-26866952 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 259-441
Cow position: chr15:36864623-36864437 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 134, 0

Conread position: 267-424
Cow position: chr15:3593499-3593341 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 124, 22

Conread position: 272-433
Cow position: chr15:12283120-12283280 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 123, 17

Conread position: 275-438
Cow position: chr15:52131791-52131951 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 120, 14

Conread position: 280-438
Cow position: chr15:16972184-16972032 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 14, 0

Conread position: 285-436
Cow position: chr15:9437460-9437615 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 51, 0

Conread position: 287-441
Cow position: chr15:8630301-8630455 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 103, 149

Conread position: 308-438
Cow position: chr15:36582575-36582441 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 313-438
Cow position: chr15:9428039-9427910 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 23, 44

Conread position: 319-438
Cow position: chr15:39809499-39809617 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 329-438
Cow position: chr15:5912385-5912274 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 345-438
Cow position: chr15:39360161-39360066 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 82
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 72, 0

Show alignments to all cow chromosomes.