Cow genome map

Conread name: rfbs3925b_o12.y1

Conread position: 1-136
Cow position: chr16:16558994-16558856 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 1-140
Cow position: chr16:45551862-45552001 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 92, 52

Conread position: 1-194
Cow position: chr16:45157452-45157269 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 138
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 1-241
Cow position: chr16:20857385-20857621 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 171
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 54, 146

Conread position: 1-267
Cow position: chr16:52814150-52813911 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 201
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 57, 122

Conread position: 1-287
Cow position: chr16:341291-341552 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 205
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 57, 68

Conread position: 1-287
Cow position: chr16:15734597-15734868 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 57, 140

Conread position: 1-302
Cow position: chr16:56374232-56373937 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 203
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 57, 24

Conread position: 1-310
Cow position: chr16:4856461-4856167 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 29

Conread position: 1-324
Cow position: chr16:19152721-19153041 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 103

Conread position: 1-378
Cow position: chr16:29205015-29204670 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 264
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 60, 82

Conread position: 1-405
Cow position: chr16:17867457-17867076 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 95

Conread position: 1-412
Cow position: chr16:4295500-4295100 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 64

Conread position: 1-415
Cow position: chr16:12243533-12243123 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 14

Conread position: 1-432
Cow position: chr16:22786018-22785602 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 142

Conread position: 1-438
Cow position: chr16:30572588-30572183 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 79

Conread position: 1-438
Cow position: chr16:43850804-43850387 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 142

Conread position: 1-438
Cow position: chr16:47781323-47781743 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 56

Conread position: 1-441
Cow position: chr16:14799714-14799291 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 44

Conread position: 1-441
Cow position: chr16:23035270-23034854 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 38

Conread position: 1-441
Cow position: chr16:41680743-41680316 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 136

Conread position: 3-318
Cow position: chr16:36911016-36910710 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 23

Conread position: 4-208
Cow position: chr16:2312634-2312437 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 54, 79

Conread position: 7-438
Cow position: chr16:13043852-13044295 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 134

Conread position: 10-441
Cow position: chr16:16118490-16118903 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 131

Conread position: 24-381
Cow position: chr16:31375127-31374787 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 17

Conread position: 26-439
Cow position: chr16:15508979-15509374 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 117

Conread position: 30-379
Cow position: chr16:14443964-14444294 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 112

Conread position: 46-233
Cow position: chr16:2375944-2375761 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 12, 94

Conread position: 46-403
Cow position: chr16:53516560-53516221 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 50

Conread position: 92-318
Cow position: chr16:5131637-5131427 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 172
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 122, 45

Conread position: 94-316
Cow position: chr16:2732020-2731820 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 162
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 121, 32

Conread position: 94-438
Cow position: chr16:47391163-47391476 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 251
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 46, 0

Conread position: 111-356
Cow position: chr16:32351959-32352201 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 109, 39

Conread position: 151-343
Cow position: chr16:6031471-6031291 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 186, 49

Conread position: 153-438
Cow position: chr16:42406025-42406308 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 48

Conread position: 176-441
Cow position: chr16:48894628-48894375 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 200
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 214, 25

Conread position: 186-425
Cow position: chr16:11597696-11597456 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 168
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 33, 107

Conread position: 190-424
Cow position: chr16:16608012-16608242 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 165
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 24, 0

Conread position: 192-425
Cow position: chr16:55910173-55909940 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 162
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 9

Conread position: 196-418
Cow position: chr16:45057611-45057830 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 19, 5

Conread position: 201-430
Cow position: chr16:17003648-17003872 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 81

Conread position: 201-441
Cow position: chr16:3742933-3742688 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 178
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 14, 87

Conread position: 204-432
Cow position: chr16:45698703-45698477 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 52

Conread position: 204-437
Cow position: chr16:40271962-40272186 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 216-438
Cow position: chr16:9703387-9703167 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 173, 39

Conread position: 218-398
Cow position: chr16:32585968-32585788 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 83, 37

Conread position: 241-441
Cow position: chr16:2371548-2371356 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 155
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 11, 0

Conread position: 249-419
Cow position: chr16:23878599-23878770 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 146, 25

Conread position: 256-434
Cow position: chr16:52650256-52650077 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 135, 33

Conread position: 284-430
Cow position: chr16:56373588-56373442 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 285-438
Cow position: chr16:43850216-43850073 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 294-435
Cow position: chr16:48604489-48604351 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 129, 59

Conread position: 294-438
Cow position: chr16:13416992-13416845 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 108
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 97, 0

Conread position: 311-433
Cow position: chr16:608569-608445 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 329-438
Cow position: chr16:4854631-4854524 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 96, 0

Show alignments to all cow chromosomes.