Cow genome map
| Conread name: | rfbs3925b_o12.y1 |
| Conread position: | 1-140 |
| Cow position: | chr2:20301979-20302117 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 56, 67 |
| Conread position: | 1-144 |
| Cow position: | chr2:19749631-19749777 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-186 |
| Cow position: | chr2:69982444-69982619 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 57, 63 |
| Conread position: | 1-192 |
| Cow position: | chr2:66435310-66435492 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 57, 130 |
| Conread position: | 1-194 |
| Cow position: | chr2:35447842-35447653 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 54, 142 |
| Conread position: | 1-287 |
| Cow position: | chr2:27145341-27145056 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 1-301 |
| Cow position: | chr2:76055530-76055243 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 57, 44 |
| Conread position: | 1-339 |
| Cow position: | chr2:33825908-33825594 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 57, 138 |
| Conread position: | 1-419 |
| Cow position: | chr2:71121052-71121453 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 91 |
| Conread position: | 1-423 |
| Cow position: | chr2:62674214-62673822 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 154 |
| Conread position: | 1-428 |
| Cow position: | chr2:33791454-33791041 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 142 |
| Conread position: | 1-431 |
| Cow position: | chr2:72598830-72599249 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 140 |
| Conread position: | 1-435 |
| Cow position: | chr2:32393439-32393836 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 86 |
| Conread position: | 1-438 |
| Cow position: | chr2:41490673-41491087 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 41 |
| Conread position: | 1-438 |
| Cow position: | chr2:43345266-43344842 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 142 |
| Conread position: | 1-438 |
| Cow position: | chr2:63288125-63287699 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 30 |
| Conread position: | 1-438 |
| Cow position: | chr2:77968476-77968064 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 136 |
| Conread position: | 1-441 |
| Cow position: | chr2:53716956-53716535 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 141 |
| Conread position: | 3-150 |
| Cow position: | chr2:46141138-46140987 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 55, 126 |
| Conread position: | 3-438 |
| Cow position: | chr2:21697705-21697266 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 152 |
| Conread position: | 4-207 |
| Cow position: | chr2:11467618-11467420 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 54, 142 |
| Conread position: | 4-229 |
| Cow position: | chr2:46019278-46019061 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 51, 134 |
| Conread position: | 8-373 |
| Cow position: | chr2:64073581-64073937 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 63 |
| Conread position: | 12-438 |
| Cow position: | chr2:74388086-74387681 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 17-356 |
| Cow position: | chr2:18249841-18249516 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 8 |
| Conread position: | 24-438 |
| Cow position: | chr2:7211844-7212244 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 32-277 |
| Cow position: | chr2:31420063-31420305 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 29, 63 |
| Conread position: | 48-331 |
| Cow position: | chr2:31490310-31490573 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 9, 53 |
| Conread position: | 57-349 |
| Cow position: | chr2:3296267-3296549 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 36, 143 |
| Conread position: | 64-424 |
| Cow position: | chr2:3182412-3182086 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 68-437 |
| Cow position: | chr2:39196681-39196321 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 27 |
| Conread position: | 72-438 |
| Cow position: | chr2:82828273-82827927 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 92-431 |
| Cow position: | chr2:47746344-47746662 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 165, 46 |
| Conread position: | 92-441 |
| Cow position: | chr2:7779376-7779023 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 38 |
| Conread position: | 96-441 |
| Cow position: | chr2:42286393-42286044 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 42 |
| Conread position: | 105-438 |
| Cow position: | chr2:14037579-14037266 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 103, 33 |
| Conread position: | 151-353 |
| Cow position: | chr2:24884162-24884359 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 152, 50 |
| Conread position: | 152-393 |
| Cow position: | chr2:37003469-37003699 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 157-421 |
| Cow position: | chr2:41162853-41163110 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 177-370 |
| Cow position: | chr2:13048411-13048600 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 150, 24 |
| Conread position: | 181-428 |
| Cow position: | chr2:24830734-24830491 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 6 |
| Conread position: | 182-425 |
| Cow position: | chr2:40680011-40680245 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 65 |
| Conread position: | 183-437 |
| Cow position: | chr2:4830625-4830370 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 15, 113 |
| Conread position: | 187-432 |
| Cow position: | chr2:3628274-3628033 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 208, 16 |
| Conread position: | 189-423 |
| Cow position: | chr2:4927870-4927635 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 16, 61 |
| Conread position: | 189-429 |
| Cow position: | chr2:50809210-50809452 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 190-413 |
| Cow position: | chr2:26911850-26912069 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 82 |
| Conread position: | 190-424 |
| Cow position: | chr2:17231636-17231408 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 70 |
| Conread position: | 190-432 |
| Cow position: | chr2:9043397-9043639 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 20, 102 |
| Conread position: | 192-405 |
| Cow position: | chr2:65463359-65463146 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 192-423 |
| Cow position: | chr2:4477999-4478226 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 23, 9 |
| Conread position: | 194-441 |
| Cow position: | chr2:1287657-1287898 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 196-435 |
| Cow position: | chr2:20281695-20281943 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 97, 18 |
| Conread position: | 204-418 |
| Cow position: | chr2:32406212-32406000 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 9, 51 |
| Conread position: | 218-425 |
| Cow position: | chr2:16123167-16122960 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 155, 34 |
| Conread position: | 218-437 |
| Cow position: | chr2:79075775-79075558 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 202, 37 |
| Conread position: | 227-440 |
| Cow position: | chr2:3544357-3544149 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 192, 34 |
| Conread position: | 248-435 |
| Cow position: | chr2:37955685-37955868 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 177, 17 |
| Conread position: | 255-439 |
| Cow position: | chr2:62463734-62463547 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 257-424 |
| Cow position: | chr2:52347504-52347337 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 136, 8 |
| Conread position: | 261-431 |
| Cow position: | chr2:80604060-80603889 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 133, 33 |
| Conread position: | 273-439 |
| Cow position: | chr2:76055106-76054947 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 275-441 |
| Cow position: | chr2:18274380-18274216 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 116, 25 |
| Conread position: | 285-435 |
| Cow position: | chr2:7365926-7365778 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 108, 21 |
| Conread position: | 285-438 |
| Cow position: | chr2:40370471-40370318 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 147, 13 |
| Conread position: | 292-438 |
| Cow position: | chr2:52183254-52183398 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 99, 18 |
| Conread position: | 293-438 |
| Cow position: | chr2:13684900-13685046 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 104, 94 |
| Conread position: | 308-438 |
| Cow position: | chr2:41417916-41417786 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 31, 96 |
Show alignments to all cow chromosomes.