Cow genome map
| Conread name: | rfbs3925b_o12.y1 |
| Conread position: | 1-113 |
| Cow position: | chr3:84153319-84153432 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-135 |
| Cow position: | chr3:32839947-32839812 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-136 |
| Cow position: | chr3:73417520-73417654 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 57, 9 |
| Conread position: | 1-141 |
| Cow position: | chr3:7381013-7380871 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 1-171 |
| Cow position: | chr3:31287113-31286942 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 46 |
| Conread position: | 1-197 |
| Cow position: | chr3:74849050-74848857 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 46, 143 |
| Conread position: | 1-198 |
| Cow position: | chr3:27347327-27347138 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 10, 73 |
| Conread position: | 1-218 |
| Cow position: | chr3:42594651-42594439 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 57, 142 |
| Conread position: | 1-221 |
| Cow position: | chr3:42489300-42489085 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 57, 142 |
| Conread position: | 1-232 |
| Cow position: | chr3:19689644-19689425 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 57, 139 |
| Conread position: | 1-381 |
| Cow position: | chr3:56711638-56711273 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 75 |
| Conread position: | 1-408 |
| Cow position: | chr3:55460495-55460108 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 30 |
| Conread position: | 1-419 |
| Cow position: | chr3:3690722-3690299 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 54 |
| Conread position: | 1-424 |
| Cow position: | chr3:1549282-1549715 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 1-424 |
| Cow position: | chr3:8753461-8753867 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 57 |
| Conread position: | 1-424 |
| Cow position: | chr3:45735140-45735580 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 111 |
| Conread position: | 1-435 |
| Cow position: | chr3:23478228-23478648 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 140 |
| Conread position: | 1-437 |
| Cow position: | chr3:60854850-60854427 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 145 |
| Conread position: | 1-438 |
| Cow position: | chr3:16115582-16115966 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 312 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 94, 37 |
| Conread position: | 1-440 |
| Cow position: | chr3:36538937-36538507 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 126 |
| Conread position: | 2-310 |
| Cow position: | chr3:80928939-80928637 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 56, 45 |
| Conread position: | 2-435 |
| Cow position: | chr3:27634009-27633594 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 12 |
| Conread position: | 2-438 |
| Cow position: | chr3:32773213-32773611 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 2-438 |
| Cow position: | chr3:77157331-77157726 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 94 |
| Conread position: | 9-400 |
| Cow position: | chr3:56042713-56042340 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 84 |
| Conread position: | 10-431 |
| Cow position: | chr3:77467955-77468366 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 8 |
| Conread position: | 39-198 |
| Cow position: | chr3:24356788-24356941 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 39-208 |
| Cow position: | chr3:25062212-25062052 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 39-438 |
| Cow position: | chr3:26582022-26581656 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 60 |
| Conread position: | 92-438 |
| Cow position: | chr3:21332712-21332394 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 46, 60 |
| Conread position: | 113-436 |
| Cow position: | chr3:8275553-8275865 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 140-438 |
| Cow position: | chr3:74846605-74846305 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 75, 9 |
| Conread position: | 153-394 |
| Cow position: | chr3:27879848-27879606 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 51, 145 |
| Conread position: | 156-435 |
| Cow position: | chr3:85086007-85086265 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 264, 45 |
| Conread position: | 158-438 |
| Cow position: | chr3:43967273-43966994 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 46 |
| Conread position: | 171-430 |
| Cow position: | chr3:34953507-34953764 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 5, 31 |
| Conread position: | 172-438 |
| Cow position: | chr3:23274814-23274553 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 77, 29 |
| Conread position: | 177-424 |
| Cow position: | chr3:41818252-41818012 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 177-430 |
| Cow position: | chr3:26531969-26531719 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 42, 75 |
| Conread position: | 177-435 |
| Cow position: | chr3:16056577-16056321 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 218, 10 |
| Conread position: | 179-425 |
| Cow position: | chr3:4555801-4555555 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 20, 37 |
| Conread position: | 179-428 |
| Cow position: | chr3:46135034-46134777 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 120 |
| Conread position: | 188-424 |
| Cow position: | chr3:40269382-40269153 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 80 |
| Conread position: | 188-437 |
| Cow position: | chr3:16170154-16169902 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 31, 87 |
| Conread position: | 189-424 |
| Cow position: | chr3:13478397-13478624 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 190-424 |
| Cow position: | chr3:55896783-55897015 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 201, 61 |
| Conread position: | 190-437 |
| Cow position: | chr3:58954168-58954417 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 190-441 |
| Cow position: | chr3:55107239-55106996 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 196-432 |
| Cow position: | chr3:31924732-31924495 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 201-438 |
| Cow position: | chr3:5084957-5084714 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 80, 195 |
| Conread position: | 201-438 |
| Cow position: | chr3:17519618-17519370 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 14, 55 |
| Conread position: | 201-441 |
| Cow position: | chr3:24531998-24532241 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 55 |
| Conread position: | 201-441 |
| Cow position: | chr3:79315363-79315602 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 203-413 |
| Cow position: | chr3:6284714-6284502 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 161, 51 |
| Conread position: | 205-441 |
| Cow position: | chr3:65392244-65392489 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 48, 9 |
| Conread position: | 206-428 |
| Cow position: | chr3:73826957-73827181 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 212-424 |
| Cow position: | chr3:16622130-16621916 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 46, 60 |
| Conread position: | 214-438 |
| Cow position: | chr3:12311274-12311495 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 179, 38 |
| Conread position: | 214-438 |
| Cow position: | chr3:60947996-60947777 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 49 |
| Conread position: | 214-441 |
| Cow position: | chr3:9420046-9419826 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 48 |
| Conread position: | 218-424 |
| Cow position: | chr3:33468582-33468378 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 218-435 |
| Cow position: | chr3:50499782-50499991 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 170, 32 |
| Conread position: | 223-422 |
| Cow position: | chr3:54329142-54328944 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 168, 28 |
| Conread position: | 239-424 |
| Cow position: | chr3:56565363-56565551 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 36 |
| Conread position: | 254-424 |
| Cow position: | chr3:15329491-15329320 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 254-441 |
| Cow position: | chr3:12531879-12531699 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 139, 35 |
| Conread position: | 257-441 |
| Cow position: | chr3:56164000-56164185 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 261-437 |
| Cow position: | chr3:35144746-35144921 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 159, 12 |
| Conread position: | 263-436 |
| Cow position: | chr3:68127340-68127509 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 263-437 |
| Cow position: | chr3:58466369-58466197 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 134, 29 |
| Conread position: | 268-423 |
| Cow position: | chr3:47497766-47497922 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 109, 21 |
| Conread position: | 275-441 |
| Cow position: | chr3:45641760-45641921 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 276-430 |
| Cow position: | chr3:27347107-27346953 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 280-421 |
| Cow position: | chr3:19559978-19559836 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 111, 9 |
| Conread position: | 286-438 |
| Cow position: | chr3:78442625-78442470 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 291-418 |
| Cow position: | chr3:36515076-36514955 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 293-438 |
| Cow position: | chr3:39385828-39385682 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 101, 63 |
| Conread position: | 293-438 |
| Cow position: | chr3:64081737-64081880 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 100, 110 |
| Conread position: | 294-435 |
| Cow position: | chr3:13526907-13527043 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 97, 25 |
| Conread position: | 294-441 |
| Cow position: | chr3:2284961-2285106 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 109, 0 |
Show alignments to all cow chromosomes.