Cow genome map
| Conread name: | rfbs3925b_o12.y1 |
| Conread position: | 1-115 |
| Cow position: | chr4:58433201-58433085 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 112 |
| Conread position: | 1-134 |
| Cow position: | chr4:57566470-57566336 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 91, 60 |
| Conread position: | 1-140 |
| Cow position: | chr4:5623183-5623043 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 57, 93 |
| Conread position: | 1-140 |
| Cow position: | chr4:45114587-45114448 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 57, 24 |
| Conread position: | 1-158 |
| Cow position: | chr4:5777036-5776877 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 57, 69 |
| Conread position: | 1-177 |
| Cow position: | chr4:53763107-53762938 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 92, 52 |
| Conread position: | 1-183 |
| Cow position: | chr4:58856736-58856560 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 92, 18 |
| Conread position: | 1-196 |
| Cow position: | chr4:20925965-20925777 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 57, 78 |
| Conread position: | 1-198 |
| Cow position: | chr4:57652257-57652450 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 57, 140 |
| Conread position: | 1-287 |
| Cow position: | chr4:32749217-32749513 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 85, 55 |
| Conread position: | 1-324 |
| Cow position: | chr4:31586808-31586498 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 1-332 |
| Cow position: | chr4:8597675-8597355 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 141 |
| Conread position: | 1-356 |
| Cow position: | chr4:58833200-58832860 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 1-367 |
| Cow position: | chr4:17176166-17176510 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 57, 137 |
| Conread position: | 1-435 |
| Cow position: | chr4:41975699-41975285 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 140 |
| Conread position: | 1-438 |
| Cow position: | chr4:47511039-47511464 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 128 |
| Conread position: | 1-441 |
| Cow position: | chr4:5188995-5188572 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 140 |
| Conread position: | 1-441 |
| Cow position: | chr4:14564898-14564471 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 41 |
| Conread position: | 1-441 |
| Cow position: | chr4:29067627-29067207 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 142 |
| Conread position: | 1-441 |
| Cow position: | chr4:34043609-34043180 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 3-354 |
| Cow position: | chr4:29222504-29222164 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 138 |
| Conread position: | 3-441 |
| Cow position: | chr4:9822167-9822592 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 49 |
| Conread position: | 5-198 |
| Cow position: | chr4:31349605-31349417 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 53, 133 |
| Conread position: | 5-415 |
| Cow position: | chr4:39646691-39647090 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 91 |
| Conread position: | 6-438 |
| Cow position: | chr4:59565556-59565986 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 8-380 |
| Cow position: | chr4:4300553-4300916 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 121 |
| Conread position: | 14-173 |
| Cow position: | chr4:49884969-49884810 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 22-438 |
| Cow position: | chr4:49741577-49741996 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 123 |
| Conread position: | 22-438 |
| Cow position: | chr4:53641359-53641749 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 119 |
| Conread position: | 24-366 |
| Cow position: | chr4:27443870-27444206 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 118 |
| Conread position: | 39-438 |
| Cow position: | chr4:6793420-6793800 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 5 |
| Conread position: | 69-318 |
| Cow position: | chr4:60159627-60159387 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 24, 42 |
| Conread position: | 79-418 |
| Cow position: | chr4:46875429-46875081 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 61 |
| Conread position: | 92-320 |
| Cow position: | chr4:51905274-51905481 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 96-438 |
| Cow position: | chr4:57222112-57221785 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 153-438 |
| Cow position: | chr4:21162799-21163081 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 48 |
| Conread position: | 154-441 |
| Cow position: | chr4:2238078-2237801 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 43, 100 |
| Conread position: | 173-441 |
| Cow position: | chr4:58856341-58856071 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 26, 84 |
| Conread position: | 189-424 |
| Cow position: | chr4:61594424-61594192 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 202, 15 |
| Conread position: | 190-435 |
| Cow position: | chr4:47087212-47086976 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 191-419 |
| Cow position: | chr4:44645072-44644848 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 77 |
| Conread position: | 191-424 |
| Cow position: | chr4:56401650-56401417 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 192-408 |
| Cow position: | chr4:35072037-35072245 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 196, 20 |
| Conread position: | 192-438 |
| Cow position: | chr4:68107166-68106928 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 83, 22 |
| Conread position: | 205-432 |
| Cow position: | chr4:45113064-45112849 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 214, 40 |
| Conread position: | 218-421 |
| Cow position: | chr4:27349096-27349294 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 173, 17 |
| Conread position: | 218-437 |
| Cow position: | chr4:4135325-4135547 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 201, 37 |
| Conread position: | 220-424 |
| Cow position: | chr4:20290915-20291119 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 5, 36 |
| Conread position: | 225-438 |
| Cow position: | chr4:36759493-36759719 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 32, 70 |
| Conread position: | 231-438 |
| Cow position: | chr4:5783957-5784156 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 36, 60 |
| Conread position: | 240-438 |
| Cow position: | chr4:20311909-20312112 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 27, 51 |
| Conread position: | 254-441 |
| Cow position: | chr4:56218591-56218778 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 138, 24 |
| Conread position: | 255-441 |
| Cow position: | chr4:20925752-20925573 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 136, 42 |
| Conread position: | 257-438 |
| Cow position: | chr4:22507126-22506942 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 135, 37 |
| Conread position: | 257-438 |
| Cow position: | chr4:24713402-24713220 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 134, 16 |
| Conread position: | 258-418 |
| Cow position: | chr4:13926405-13926246 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 133, 43 |
| Conread position: | 265-430 |
| Cow position: | chr4:27228726-27228890 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 125, 24 |
| Conread position: | 272-441 |
| Cow position: | chr4:2443623-2443460 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 148, 16 |
| Conread position: | 272-441 |
| Cow position: | chr4:57565951-57565782 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 67, 17 |
| Conread position: | 285-434 |
| Cow position: | chr4:15283467-15283619 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 109, 77 |
| Conread position: | 286-418 |
| Cow position: | chr4:57652493-57652623 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 286-438 |
| Cow position: | chr4:31003075-31002924 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 308-438 |
| Cow position: | chr4:25924655-25924526 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 85, 118 |
| Conread position: | 308-441 |
| Cow position: | chr4:51905574-51905708 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 87, 131 |
| Conread position: | 329-438 |
| Cow position: | chr4:5886664-5886775 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
Show alignments to all cow chromosomes.