Cow genome map
| Conread name: | rfbs3925b_o12.y1 |
| Conread position: | 1-135 |
| Cow position: | chr5:25225591-25225453 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-184 |
| Cow position: | chr5:48224531-48224352 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 57, 142 |
| Conread position: | 1-188 |
| Cow position: | chr5:364542-364360 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 57, 95 |
| Conread position: | 1-198 |
| Cow position: | chr5:25927645-25927455 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 1-207 |
| Cow position: | chr5:19300381-19300191 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-210 |
| Cow position: | chr5:70128192-70128392 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 57, 68 |
| Conread position: | 1-238 |
| Cow position: | chr5:34483482-34483250 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 53, 126 |
| Conread position: | 1-308 |
| Cow position: | chr5:10786186-10785879 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 60 |
| Conread position: | 1-331 |
| Cow position: | chr5:54156750-54157063 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 95 |
| Conread position: | 1-382 |
| Cow position: | chr5:15882414-15882045 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 14 |
| Conread position: | 1-421 |
| Cow position: | chr5:1305183-1304774 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 58 |
| Conread position: | 1-424 |
| Cow position: | chr5:45912246-45911845 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 1-424 |
| Cow position: | chr5:60968459-60968885 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 140 |
| Conread position: | 1-434 |
| Cow position: | chr5:37048102-37048517 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 30 |
| Conread position: | 1-438 |
| Cow position: | chr5:26098635-26098212 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 92 |
| Conread position: | 1-441 |
| Cow position: | chr5:51076593-51076153 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 139 |
| Conread position: | 2-438 |
| Cow position: | chr5:21146178-21145764 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 30 |
| Conread position: | 2-441 |
| Cow position: | chr5:23234519-23234935 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 3-429 |
| Cow position: | chr5:29431584-29431202 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 305 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 4-198 |
| Cow position: | chr5:39118240-39118424 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 54, 26 |
| Conread position: | 16-335 |
| Cow position: | chr5:27492761-27493074 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 124 |
| Conread position: | 23-438 |
| Cow position: | chr5:57127517-57127916 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 39-388 |
| Cow position: | chr5:9233294-9232959 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 19, 102 |
| Conread position: | 51-321 |
| Cow position: | chr5:21166958-21166699 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 45, 89 |
| Conread position: | 95-438 |
| Cow position: | chr5:13575635-13575288 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 22, 108 |
| Conread position: | 96-336 |
| Cow position: | chr5:60725183-60725399 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 96-412 |
| Cow position: | chr5:10455506-10455804 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 17 |
| Conread position: | 96-441 |
| Cow position: | chr5:56741808-56742123 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 105-330 |
| Cow position: | chr5:50156433-50156220 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 109, 33 |
| Conread position: | 120-438 |
| Cow position: | chr5:9585567-9585285 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 306, 16 |
| Conread position: | 122-344 |
| Cow position: | chr5:33564029-33564237 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 146-344 |
| Cow position: | chr5:73051286-73051500 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 149-331 |
| Cow position: | chr5:20649376-20649189 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 39, 114 |
| Conread position: | 150-396 |
| Cow position: | chr5:54761047-54761309 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 40 |
| Conread position: | 151-331 |
| Cow position: | chr5:56825970-56826158 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 143 |
| Conread position: | 151-409 |
| Cow position: | chr5:62579994-62580241 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 22, 49 |
| Conread position: | 153-324 |
| Cow position: | chr5:19299566-19299394 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 27 |
| Conread position: | 156-437 |
| Cow position: | chr5:6149840-6149557 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 39, 60 |
| Conread position: | 157-353 |
| Cow position: | chr5:46334899-46335094 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 157-438 |
| Cow position: | chr5:28770455-28770720 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 270, 44 |
| Conread position: | 157-441 |
| Cow position: | chr5:25925681-25925405 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 39 |
| Conread position: | 177-393 |
| Cow position: | chr5:49238987-49238777 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 179-381 |
| Cow position: | chr5:42587714-42587522 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 83 |
| Conread position: | 179-439 |
| Cow position: | chr5:14072359-14072115 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 216, 38 |
| Conread position: | 189-441 |
| Cow position: | chr5:38273992-38274246 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 191, 11 |
| Conread position: | 190-424 |
| Cow position: | chr5:53914947-53914712 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 190-438 |
| Cow position: | chr5:35583853-35584103 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 25, 79 |
| Conread position: | 190-438 |
| Cow position: | chr5:57965074-57964834 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 25, 62 |
| Conread position: | 191-385 |
| Cow position: | chr5:38911289-38911483 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 8, 90 |
| Conread position: | 192-424 |
| Cow position: | chr5:55985595-55985362 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 18, 75 |
| Conread position: | 193-424 |
| Cow position: | chr5:10095889-10095657 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 205, 68 |
| Conread position: | 194-438 |
| Cow position: | chr5:51360871-51361107 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 7 |
| Conread position: | 197-423 |
| Cow position: | chr5:51761258-51761039 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 201-437 |
| Cow position: | chr5:51953103-51953340 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 203-441 |
| Cow position: | chr5:56109926-56109690 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 192, 57 |
| Conread position: | 204-425 |
| Cow position: | chr5:50770411-50770192 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 211-418 |
| Cow position: | chr5:31722825-31722611 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 82 |
| Conread position: | 214-438 |
| Cow position: | chr5:53599808-53599587 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 79 |
| Conread position: | 218-424 |
| Cow position: | chr5:54557190-54557400 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 88, 68 |
| Conread position: | 218-430 |
| Cow position: | chr5:44491561-44491773 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 173, 37 |
| Conread position: | 237-438 |
| Cow position: | chr5:35748805-35749007 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 9, 59 |
| Conread position: | 245-424 |
| Cow position: | chr5:71278928-71279102 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 146, 44 |
| Conread position: | 248-424 |
| Cow position: | chr5:12329416-12329241 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 13 |
| Conread position: | 253-418 |
| Cow position: | chr5:37608533-37608700 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 115, 18 |
| Conread position: | 254-441 |
| Cow position: | chr5:67463499-67463679 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 154, 37 |
| Conread position: | 257-437 |
| Cow position: | chr5:18002271-18002092 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 73, 8 |
| Conread position: | 259-440 |
| Cow position: | chr5:27679534-27679362 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 161, 30 |
| Conread position: | 265-438 |
| Cow position: | chr5:34483249-34483084 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 267-433 |
| Cow position: | chr5:54606166-54606327 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 124, 24 |
| Conread position: | 279-435 |
| Cow position: | chr5:25355311-25355469 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 50, 10 |
| Conread position: | 285-441 |
| Cow position: | chr5:53922229-53922080 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 110, 41 |
| Conread position: | 286-437 |
| Cow position: | chr5:28371083-28370928 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 305-441 |
| Cow position: | chr5:15808588-15808451 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 86, 134 |
| Conread position: | 308-441 |
| Cow position: | chr5:9025512-9025648 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 69 |
| Conread position: | 312-438 |
| Cow position: | chr5:39206955-39206829 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 326-438 |
| Cow position: | chr5:47698037-47697921 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 340-438 |
| Cow position: | chr5:18379618-18379719 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.