Cow genome map
| Conread name: | rfbs3925b_o12.y1 |
| Conread position: | 1-140 |
| Cow position: | chr6:1095295-1095153 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-184 |
| Cow position: | chr6:32428302-32428476 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 94, 29 |
| Conread position: | 1-187 |
| Cow position: | chr6:20332418-20332240 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 1-191 |
| Cow position: | chr6:16337679-16337494 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 45, 138 |
| Conread position: | 1-198 |
| Cow position: | chr6:12519563-12519752 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 92, 60 |
| Conread position: | 1-202 |
| Cow position: | chr6:51071773-51071969 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 57, 139 |
| Conread position: | 1-209 |
| Cow position: | chr6:6244841-6244638 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 1-318 |
| Cow position: | chr6:27710713-27711031 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 246 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 56, 77 |
| Conread position: | 1-330 |
| Cow position: | chr6:39292969-39293267 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 13, 78 |
| Conread position: | 1-346 |
| Cow position: | chr6:4666731-4666397 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 144 |
| Conread position: | 1-415 |
| Cow position: | chr6:29077800-29078188 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 69 |
| Conread position: | 1-420 |
| Cow position: | chr6:39917234-39917636 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 49 |
| Conread position: | 1-424 |
| Cow position: | chr6:69274724-69274307 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 138 |
| Conread position: | 1-435 |
| Cow position: | chr6:31688121-31687707 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 1-435 |
| Cow position: | chr6:45617368-45616950 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 104 |
| Conread position: | 1-438 |
| Cow position: | chr6:41557534-41557966 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 46 |
| Conread position: | 1-438 |
| Cow position: | chr6:45692594-45692179 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 140 |
| Conread position: | 1-441 |
| Cow position: | chr6:6635208-6635629 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 1-441 |
| Cow position: | chr6:11159938-11159510 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 82 |
| Conread position: | 1-441 |
| Cow position: | chr6:23891622-23892037 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 139 |
| Conread position: | 1-441 |
| Cow position: | chr6:44377335-44377756 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 92 |
| Conread position: | 3-441 |
| Cow position: | chr6:3017517-3017952 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 80 |
| Conread position: | 13-390 |
| Cow position: | chr6:23932886-23932539 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 22-440 |
| Cow position: | chr6:62754396-62754005 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 45 |
| Conread position: | 43-357 |
| Cow position: | chr6:19459147-19459453 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 15, 75 |
| Conread position: | 53-438 |
| Cow position: | chr6:41157346-41157705 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 282 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 5, 89 |
| Conread position: | 98-441 |
| Cow position: | chr6:29082896-29082595 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 110-436 |
| Cow position: | chr6:3374271-3373941 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 28 |
| Conread position: | 149-327 |
| Cow position: | chr6:40299213-40299043 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 66, 12 |
| Conread position: | 177-430 |
| Cow position: | chr6:12740511-12740756 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 42, 10 |
| Conread position: | 181-441 |
| Cow position: | chr6:53416727-53416472 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 34, 20 |
| Conread position: | 183-424 |
| Cow position: | chr6:12516067-12516304 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 36, 64 |
| Conread position: | 186-428 |
| Cow position: | chr6:10485000-10484760 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 20, 68 |
| Conread position: | 188-393 |
| Cow position: | chr6:62975690-62975491 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 190-419 |
| Cow position: | chr6:6164581-6164803 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 210, 14 |
| Conread position: | 190-437 |
| Cow position: | chr6:29299790-29300037 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 11, 70 |
| Conread position: | 192-408 |
| Cow position: | chr6:6722386-6722597 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 192-418 |
| Cow position: | chr6:46627243-46627469 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 130, 22 |
| Conread position: | 201-441 |
| Cow position: | chr6:32428692-32428929 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 201-441 |
| Cow position: | chr6:66840113-66840355 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 14, 55 |
| Conread position: | 203-393 |
| Cow position: | chr6:50625541-50625739 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 204-389 |
| Cow position: | chr6:55659745-55659551 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 209-376 |
| Cow position: | chr6:11035632-11035468 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 56 |
| Conread position: | 213-386 |
| Cow position: | chr6:26692869-26692698 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 214-401 |
| Cow position: | chr6:6244653-6244472 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 180, 46 |
| Conread position: | 214-438 |
| Cow position: | chr6:66676974-66677208 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 219-410 |
| Cow position: | chr6:28087246-28087061 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 35 |
| Conread position: | 219-438 |
| Cow position: | chr6:812144-811921 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 28, 15 |
| Conread position: | 224-424 |
| Cow position: | chr6:27222143-27222342 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 167, 28 |
| Conread position: | 247-437 |
| Cow position: | chr6:4728939-4728750 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 143, 14 |
| Conread position: | 248-438 |
| Cow position: | chr6:20332604-20332795 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 133, 46 |
| Conread position: | 260-441 |
| Cow position: | chr6:44389943-44389760 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 126, 34 |
| Conread position: | 269-441 |
| Cow position: | chr6:35831861-35832041 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 95, 12 |
| Conread position: | 300-441 |
| Cow position: | chr6:33311452-33311593 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 117, 110 |
| Conread position: | 313-441 |
| Cow position: | chr6:39293531-39293657 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 112, 77 |
Show alignments to all cow chromosomes.