Cow genome map
| Conread name: | rfbs3925b_o12.y1 |
| Conread position: | 1-140 |
| Cow position: | chr9:2223768-2223912 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-260 |
| Cow position: | chr9:12181973-12181719 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 57, 42 |
| Conread position: | 1-312 |
| Cow position: | chr9:14732341-14732023 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 59, 76 |
| Conread position: | 1-324 |
| Cow position: | chr9:55364899-55364583 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 81 |
| Conread position: | 1-370 |
| Cow position: | chr9:44944101-44944451 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 40 |
| Conread position: | 1-401 |
| Cow position: | chr9:6109892-6109520 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 1-408 |
| Cow position: | chr9:5622019-5622408 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 57 |
| Conread position: | 1-424 |
| Cow position: | chr9:1281095-1281513 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 141 |
| Conread position: | 1-438 |
| Cow position: | chr9:12183751-12183307 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 140 |
| Conread position: | 1-438 |
| Cow position: | chr9:34762847-34763272 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 147 |
| Conread position: | 1-438 |
| Cow position: | chr9:41317969-41318402 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 56 |
| Conread position: | 1-440 |
| Cow position: | chr9:12198892-12199328 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 1-441 |
| Cow position: | chr9:4834993-4834560 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 128 |
| Conread position: | 1-441 |
| Cow position: | chr9:18570381-18570810 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 140 |
| Conread position: | 2-136 |
| Cow position: | chr9:9635090-9635228 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 3-247 |
| Cow position: | chr9:10761344-10761571 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 3-250 |
| Cow position: | chr9:25502529-25502762 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 55, 137 |
| Conread position: | 3-441 |
| Cow position: | chr9:51269871-51269457 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 138 |
| Conread position: | 7-438 |
| Cow position: | chr9:9077105-9077526 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 140 |
| Conread position: | 22-198 |
| Cow position: | chr9:55651020-55650848 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 118 |
| Conread position: | 22-246 |
| Cow position: | chr9:59114362-59114141 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 25-324 |
| Cow position: | chr9:15685467-15685751 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 46 |
| Conread position: | 59-438 |
| Cow position: | chr9:52725406-52725774 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 69-378 |
| Cow position: | chr9:39993676-39993971 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 92-413 |
| Cow position: | chr9:7670531-7670226 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 46 |
| Conread position: | 96-439 |
| Cow position: | chr9:34188873-34188561 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 255 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 323, 42 |
| Conread position: | 97-438 |
| Cow position: | chr9:53596899-53597229 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 18 |
| Conread position: | 98-435 |
| Cow position: | chr9:2638410-2638739 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 100, 40 |
| Conread position: | 151-441 |
| Cow position: | chr9:35527576-35527293 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 107, 15 |
| Conread position: | 153-438 |
| Cow position: | chr9:1526929-1527220 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 106 |
| Conread position: | 154-441 |
| Cow position: | chr9:12565240-12564969 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 43, 33 |
| Conread position: | 157-415 |
| Cow position: | chr9:47794696-47794445 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 238, 39 |
| Conread position: | 164-438 |
| Cow position: | chr9:3582765-3583034 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 66 |
| Conread position: | 167-441 |
| Cow position: | chr9:4985515-4985787 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 33 |
| Conread position: | 177-392 |
| Cow position: | chr9:42214812-42215026 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 181-441 |
| Cow position: | chr9:9539426-9539175 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 6 |
| Conread position: | 190-441 |
| Cow position: | chr9:26197808-26198054 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 57, 30 |
| Conread position: | 191-394 |
| Cow position: | chr9:52766618-52766827 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 27, 8 |
| Conread position: | 192-441 |
| Cow position: | chr9:47200390-47200638 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 7, 79 |
| Conread position: | 193-441 |
| Cow position: | chr9:1517477-1517715 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 202, 21 |
| Conread position: | 196-437 |
| Cow position: | chr9:35224768-35224529 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 99 |
| Conread position: | 197-370 |
| Cow position: | chr9:19080404-19080576 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 56 |
| Conread position: | 201-424 |
| Cow position: | chr9:24886476-24886695 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 5, 48 |
| Conread position: | 201-424 |
| Cow position: | chr9:39001580-39001363 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 204-428 |
| Cow position: | chr9:41904245-41904027 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 46 |
| Conread position: | 204-441 |
| Cow position: | chr9:10003870-10003639 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 73 |
| Conread position: | 205-415 |
| Cow position: | chr9:8723224-8723435 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 239-433 |
| Cow position: | chr9:15855261-15855448 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 245-438 |
| Cow position: | chr9:46657868-46658062 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 257-435 |
| Cow position: | chr9:50108842-50108660 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 48, 8 |
| Conread position: | 258-441 |
| Cow position: | chr9:6557580-6557403 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 259-429 |
| Cow position: | chr9:40858922-40859094 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 272-435 |
| Cow position: | chr9:417051-416892 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 88, 17 |
| Conread position: | 272-441 |
| Cow position: | chr9:25502762-25502929 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 273-438 |
| Cow position: | chr9:55262501-55262672 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 280-424 |
| Cow position: | chr9:7537815-7537957 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 285-438 |
| Cow position: | chr9:25812575-25812723 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 108, 27 |
| Conread position: | 295-441 |
| Cow position: | chr9:58125907-58125759 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 66, 62 |
| Conread position: | 318-438 |
| Cow position: | chr9:45140597-45140474 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 320-438 |
| Cow position: | chr9:22376964-22376843 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.