Cow genome map
| Conread name: | rfbs3925b_o12.y1 |
| Conread position: | 1-121 |
| Cow position: | chrX:11982190-11982313 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-134 |
| Cow position: | chrX:24952503-24952372 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 58, 37 |
| Conread position: | 1-194 |
| Cow position: | chrX:12826804-12826993 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 1-205 |
| Cow position: | chrX:2147397-2147587 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 57, 43 |
| Conread position: | 1-246 |
| Cow position: | chrX:4631618-4631381 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 1-321 |
| Cow position: | chrX:24286010-24286318 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 57, 99 |
| Conread position: | 1-355 |
| Cow position: | chrX:16816726-16817059 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 52 |
| Conread position: | 1-393 |
| Cow position: | chrX:10311800-10312166 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 48 |
| Conread position: | 1-424 |
| Cow position: | chrX:18814225-18814628 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 122 |
| Conread position: | 1-435 |
| Cow position: | chrX:23254152-23253741 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 314 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 57, 107 |
| Conread position: | 1-438 |
| Cow position: | chrX:2186313-2186726 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 140 |
| Conread position: | 1-438 |
| Cow position: | chrX:4597672-4597240 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 42 |
| Conread position: | 1-438 |
| Cow position: | chrX:8558409-8557993 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 9 |
| Conread position: | 1-438 |
| Cow position: | chrX:11675118-11675544 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 142 |
| Conread position: | 1-438 |
| Cow position: | chrX:12689033-12688608 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 141 |
| Conread position: | 1-438 |
| Cow position: | chrX:21816319-21816740 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 54 |
| Conread position: | 1-438 |
| Cow position: | chrX:24201234-24201649 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 80 |
| Conread position: | 1-441 |
| Cow position: | chrX:25453237-25453652 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 18 |
| Conread position: | 4-438 |
| Cow position: | chrX:19018203-19017766 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 108 |
| Conread position: | 5-438 |
| Cow position: | chrX:21886059-21885632 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 126 |
| Conread position: | 19-438 |
| Cow position: | chrX:956552-956959 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 122 |
| Conread position: | 25-438 |
| Cow position: | chrX:43647686-43647283 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 106 |
| Conread position: | 39-354 |
| Cow position: | chrX:3405056-3404751 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 18, 72 |
| Conread position: | 43-441 |
| Cow position: | chrX:9910659-9910276 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 98 |
| Conread position: | 45-438 |
| Cow position: | chrX:25106310-25106696 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 13 |
| Conread position: | 49-221 |
| Cow position: | chrX:1426861-1427035 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 9, 104 |
| Conread position: | 57-438 |
| Cow position: | chrX:31816801-31817147 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 79-356 |
| Cow position: | chrX:18517918-18518196 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 16, 63 |
| Conread position: | 81-440 |
| Cow position: | chrX:28938929-28939267 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 182, 57 |
| Conread position: | 92-336 |
| Cow position: | chrX:19217180-19216945 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 74, 46 |
| Conread position: | 96-438 |
| Cow position: | chrX:4590103-4590418 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 103-369 |
| Cow position: | chrX:9051277-9051025 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 101, 35 |
| Conread position: | 107-438 |
| Cow position: | chrX:40353471-40353782 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 31 |
| Conread position: | 151-438 |
| Cow position: | chrX:20504897-20505180 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 151-439 |
| Cow position: | chrX:24952175-24951897 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 106 |
| Conread position: | 156-441 |
| Cow position: | chrX:27458532-27458251 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 45, 91 |
| Conread position: | 160-428 |
| Cow position: | chrX:24193981-24194249 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 43, 103 |
| Conread position: | 164-424 |
| Cow position: | chrX:28515974-28515718 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 18, 8 |
| Conread position: | 164-438 |
| Cow position: | chrX:19127430-19127165 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 164-441 |
| Cow position: | chrX:18700159-18699878 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 168-424 |
| Cow position: | chrX:27024047-27024296 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 54, 89 |
| Conread position: | 174-423 |
| Cow position: | chrX:24886570-24886331 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 174-441 |
| Cow position: | chrX:2700894-2700631 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 177-438 |
| Cow position: | chrX:37364631-37364893 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 41, 57 |
| Conread position: | 177-438 |
| Cow position: | chrX:37980601-37980859 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 74, 24 |
| Conread position: | 181-438 |
| Cow position: | chrX:6471929-6472181 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 142, 19 |
| Conread position: | 186-384 |
| Cow position: | chrX:25921559-25921367 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 189-436 |
| Cow position: | chrX:37067248-37067497 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 77 |
| Conread position: | 190-352 |
| Cow position: | chrX:24827241-24827401 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 190-419 |
| Cow position: | chrX:6277530-6277301 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 65, 47 |
| Conread position: | 190-430 |
| Cow position: | chrX:4629772-4629523 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 29, 11 |
| Conread position: | 190-438 |
| Cow position: | chrX:11982825-11983063 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 14, 79 |
| Conread position: | 193-391 |
| Cow position: | chrX:2079073-2078881 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 183, 21 |
| Conread position: | 196-424 |
| Cow position: | chrX:20715999-20715774 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 201-356 |
| Cow position: | chrX:5660284-5660440 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 62 |
| Conread position: | 201-411 |
| Cow position: | chrX:10534318-10534524 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 201-435 |
| Cow position: | chrX:4625143-4625379 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 54 |
| Conread position: | 204-393 |
| Cow position: | chrX:24559962-24560143 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 204-424 |
| Cow position: | chrX:4794251-4794038 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 67 |
| Conread position: | 214-435 |
| Cow position: | chrX:32546144-32546366 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 214-441 |
| Cow position: | chrX:37138023-37137802 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 219-427 |
| Cow position: | chrX:21989771-21989976 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 198, 53 |
| Conread position: | 239-429 |
| Cow position: | chrX:4631098-4630910 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 181, 15 |
| Conread position: | 240-398 |
| Cow position: | chrX:1427032-1427187 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 153, 12 |
| Conread position: | 244-385 |
| Cow position: | chrX:25653394-25653533 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 244-441 |
| Cow position: | chrX:13403465-13403270 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 146, 11 |
| Conread position: | 247-424 |
| Cow position: | chrX:40698524-40698696 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 34, 48 |
| Conread position: | 247-430 |
| Cow position: | chrX:4601358-4601177 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 147, 18 |
| Conread position: | 247-432 |
| Cow position: | chrX:37236298-37236469 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 174, 14 |
| Conread position: | 250-424 |
| Cow position: | chrX:32049256-32049427 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 256-418 |
| Cow position: | chrX:13060835-13060996 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 256-435 |
| Cow position: | chrX:2147610-2147786 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 146 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 257-433 |
| Cow position: | chrX:39190944-39190767 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 134, 32 |
| Conread position: | 275-431 |
| Cow position: | chrX:263815-263659 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 116, 14 |
| Conread position: | 284-438 |
| Cow position: | chrX:1330478-1330328 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 286-433 |
| Cow position: | chrX:48428725-48428872 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 83 |
| Conread position: | 315-438 |
| Cow position: | chrX:4440197-4440324 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 336-438 |
| Cow position: | chrX:24286303-24286406 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 81 |
Show alignments to all cow chromosomes.