Cow genome map
| Conread name: | rfbs3940b_b12.y1 |
| Conread position: | 1-368 |
| Cow position: | chr19:43570099-43569732 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 172, 192 |
| Conread position: | 1-375 |
| Cow position: | chr19:14948425-14948052 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 234 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 361, 24 |
| Conread position: | 1-381 |
| Cow position: | chr19:20677824-20678204 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 26, 21 |
| Conread position: | 2-381 |
| Cow position: | chr19:14959693-14959316 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 244 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 197, 42 |
| Conread position: | 6-381 |
| Cow position: | chr19:14940118-14940493 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 170, 179 |
| Conread position: | 7-381 |
| Cow position: | chr19:14940371-14940745 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 271, 265 |
| Conread position: | 7-381 |
| Cow position: | chr19:14940455-14940829 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 71, 84 |
| Conread position: | 7-381 |
| Cow position: | chr19:23614655-23615029 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 104 |
| Conread position: | 8-297 |
| Cow position: | chr19:14959116-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 250, 264 |
| Conread position: | 8-381 |
| Cow position: | chr19:14960093-14959722 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 248 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 8-381 |
| Cow position: | chr19:20635501-20635128 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 169, 177 |
| Conread position: | 8-381 |
| Cow position: | chr19:23649686-23650059 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 150, 159 |
| Conread position: | 8-381 |
| Cow position: | chr19:23649854-23650227 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 69, 86 |
| Conread position: | 9-377 |
| Cow position: | chr19:23597330-23597698 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-301 |
| Cow position: | chr19:14940794-14941085 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 69, 85 |
| Conread position: | 10-324 |
| Cow position: | chr19:14940710-14941024 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 268, 262 |
| Conread position: | 10-330 |
| Cow position: | chr19:43570174-43569854 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 88, 101 |
| Conread position: | 10-381 |
| Cow position: | chr19:23597247-23597618 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 84 |
| Conread position: | 10-381 |
| Cow position: | chr19:23649940-23650311 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-337 |
| Cow position: | chr19:14940291-14940617 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-381 |
| Cow position: | chr19:20635582-20635212 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 162, 180 |
| Conread position: | 15-338 |
| Cow position: | chr19:20635662-20635339 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 15-381 |
| Cow position: | chr19:20635410-20635044 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 233 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 348, 341 |
| Conread position: | 16-381 |
| Cow position: | chr19:23613656-23614021 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 168, 156 |
| Conread position: | 16-381 |
| Cow position: | chr19:23614160-23614525 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 95, 89 |
| Conread position: | 16-381 |
| Cow position: | chr19:23650114-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 160, 178 |
| Conread position: | 17-338 |
| Cow position: | chr19:23613489-23613810 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 81, 93 |
| Conread position: | 17-378 |
| Cow position: | chr19:14940045-14940406 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-379 |
| Cow position: | chr19:14916020-14916378 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 280, 119 |
| Conread position: | 17-381 |
| Cow position: | chr19:23613825-23614189 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 167, 152 |
| Conread position: | 22-381 |
| Cow position: | chr19:14960246-14959888 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 5, 72 |
| Conread position: | 25-336 |
| Cow position: | chr19:23614841-23615148 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 159, 145 |
| Conread position: | 25-378 |
| Cow position: | chr19:23613917-23614270 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 338, 331 |
| Conread position: | 25-381 |
| Cow position: | chr19:23597094-23597450 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 244 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 53, 66 |
| Conread position: | 26-330 |
| Cow position: | chr19:20677513-20677817 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 152, 159 |
| Conread position: | 26-331 |
| Cow position: | chr19:43569990-43569689 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 74, 85 |
| Conread position: | 26-334 |
| Cow position: | chr19:14959419-14959120 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 26-336 |
| Cow position: | chr19:23614506-23614816 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 72, 81 |
| Conread position: | 26-336 |
| Cow position: | chr19:23649620-23649930 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 171, 179 |
| Conread position: | 26-336 |
| Cow position: | chr19:43570242-43569932 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 65, 69 |
| Conread position: | 26-337 |
| Cow position: | chr19:14940558-14940870 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 146, 164 |
| Conread position: | 26-338 |
| Cow position: | chr19:23613414-23613726 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 160 |
| Conread position: | 26-338 |
| Cow position: | chr19:23614422-23614734 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-338 |
| Cow position: | chr19:23614758-23615070 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 72, 84 |
| Conread position: | 26-339 |
| Cow position: | chr19:23614338-23614651 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 68, 82 |
| Conread position: | 26-340 |
| Cow position: | chr19:23614086-23614400 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 146, 159 |
| Conread position: | 26-381 |
| Cow position: | chr19:14940222-14940577 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 85 |
| Conread position: | 26-381 |
| Cow position: | chr19:14959176-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 276, 66 |
| Conread position: | 26-381 |
| Cow position: | chr19:14960409-14960056 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 85, 80 |
| Conread position: | 26-381 |
| Cow position: | chr19:20678101-20678456 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 155, 159 |
| Conread position: | 26-381 |
| Cow position: | chr19:23596930-23597282 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 152, 103 |
| Conread position: | 26-381 |
| Cow position: | chr19:23613582-23613937 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 332, 324 |
| Conread position: | 26-381 |
| Cow position: | chr19:23613750-23614105 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 192, 204 |
| Conread position: | 26-381 |
| Cow position: | chr19:23614590-23614945 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 221 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-381 |
| Cow position: | chr19:23649452-23649807 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 86, 78 |
| Conread position: | 26-381 |
| Cow position: | chr19:23649536-23649891 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 86, 78 |
| Conread position: | 27-381 |
| Cow position: | chr19:43570315-43569971 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 149, 39 |
| Conread position: | 31-305 |
| Cow position: | chr19:14960154-14959878 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 80, 74 |
| Conread position: | 31-337 |
| Cow position: | chr19:20678190-20678496 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 32-336 |
| Cow position: | chr19:20677771-20678075 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 79, 74 |
| Conread position: | 32-336 |
| Cow position: | chr19:20678275-20678579 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 72, 79 |
| Conread position: | 32-336 |
| Cow position: | chr19:23614008-23614312 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 56, 73 |
| Conread position: | 32-337 |
| Cow position: | chr19:20678359-20678664 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 84, 75 |
| Conread position: | 32-381 |
| Cow position: | chr19:14940648-14940997 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 331, 324 |
| Conread position: | 32-381 |
| Cow position: | chr19:20677687-20678036 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 231 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 336, 321 |
| Conread position: | 37-376 |
| Cow position: | chr19:14915955-14916290 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 59, 20 |
| Conread position: | 37-377 |
| Cow position: | chr19:20677440-20677780 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 10, 21 |
| Conread position: | 38-336 |
| Cow position: | chr19:20677945-20678243 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 38-375 |
| Cow position: | chr19:23597191-23597528 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-381 |
| Cow position: | chr19:14939988-14940325 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 141, 127 |
| Conread position: | 46-381 |
| Cow position: | chr19:23613350-23613685 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 46-381 |
| Cow position: | chr19:23649388-23649723 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 60-336 |
| Cow position: | chr19:20677631-20677907 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 102, 126 |
| Conread position: | 110-381 |
| Cow position: | chr19:14948484-14948214 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 21, 35 |
| Conread position: | 115-339 |
| Cow position: | chr19:20635646-20635422 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.