Cow genome map
| Conread name: | rfbs3940b_b12.y1 |
| Conread position: | 7-286 |
| Cow position: | chr25:366769-367048 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 142, 148 |
| Conread position: | 7-309 |
| Cow position: | chr25:346492-346794 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 211, 220 |
| Conread position: | 7-381 |
| Cow position: | chr25:33299195-33299569 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 250 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 20, 13 |
| Conread position: | 8-233 |
| Cow position: | chr25:33128015-33128240 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-372 |
| Cow position: | chr25:33157092-33156729 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 300 |
| Conread position: | 8-377 |
| Cow position: | chr25:33145059-33145428 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-381 |
| Cow position: | chr25:33157176-33156803 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-381 |
| Cow position: | chr25:33157260-33156887 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 12 |
| Conread position: | 8-381 |
| Cow position: | chr25:33157344-33156971 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 96 |
| Conread position: | 8-381 |
| Cow position: | chr25:34769659-34769286 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 168 |
| Conread position: | 8-381 |
| Cow position: | chr25:34769995-34769622 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-381 |
| Cow position: | chr25:23420346-23420717 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 245 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 152, 175 |
| Conread position: | 10-381 |
| Cow position: | chr25:34769741-34769370 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 168, 179 |
| Conread position: | 11-336 |
| Cow position: | chr25:34769572-34769247 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 100, 93 |
| Conread position: | 11-342 |
| Cow position: | chr25:36801015-36801347 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 75, 85 |
| Conread position: | 11-381 |
| Cow position: | chr25:33157425-33157055 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-381 |
| Cow position: | chr25:33298947-33299317 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 246 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 71, 85 |
| Conread position: | 11-381 |
| Cow position: | chr25:33299367-33299737 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 93, 100 |
| Conread position: | 11-381 |
| Cow position: | chr25:34769908-34769538 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-331 |
| Cow position: | chr25:34433489-34433804 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 117 |
| Conread position: | 15-291 |
| Cow position: | chr25:23420603-23420879 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-335 |
| Cow position: | chr25:23420519-23420840 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 313, 0 |
| Conread position: | 16-336 |
| Cow position: | chr25:23420436-23420756 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 67 |
| Conread position: | 16-353 |
| Cow position: | chr25:34447411-34447746 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 229 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 183, 189 |
| Conread position: | 16-378 |
| Cow position: | chr25:34446991-34447353 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 17-327 |
| Cow position: | chr25:18642201-18641888 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 96, 72 |
| Conread position: | 17-378 |
| Cow position: | chr25:34433578-34433935 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 29 |
| Conread position: | 18-381 |
| Cow position: | chr25:36800685-36801049 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 9, 94 |
| Conread position: | 22-375 |
| Cow position: | chr25:326470-326825 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 22, 38 |
| Conread position: | 22-381 |
| Cow position: | chr25:33298621-33298981 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 6, 90 |
| Conread position: | 24-378 |
| Cow position: | chr25:33306158-33305803 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 62, 110 |
| Conread position: | 24-379 |
| Cow position: | chr25:34714010-34714366 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 14, 59 |
| Conread position: | 25-331 |
| Cow position: | chr25:366703-367009 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 253, 248 |
| Conread position: | 25-381 |
| Cow position: | chr25:346426-346782 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 209, 214 |
| Conread position: | 26-317 |
| Cow position: | chr25:33305256-33304968 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 214, 144 |
| Conread position: | 26-335 |
| Cow position: | chr25:36801522-36801832 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 307, 0 |
| Conread position: | 26-336 |
| Cow position: | chr25:22235892-22236202 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 56, 69 |
| Conread position: | 26-336 |
| Cow position: | chr25:33305172-33304867 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 130, 60 |
| Conread position: | 26-336 |
| Cow position: | chr25:34447337-34447647 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 144 |
| Conread position: | 26-338 |
| Cow position: | chr25:34447253-34447565 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 213 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-377 |
| Cow position: | chr25:33299466-33299817 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 108, 115 |
| Conread position: | 26-377 |
| Cow position: | chr25:36801606-36801957 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 67, 56 |
| Conread position: | 26-378 |
| Cow position: | chr25:33127781-33128133 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 26-378 |
| Cow position: | chr25:33127865-33128217 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 26-380 |
| Cow position: | chr25:36800946-36801300 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 240 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 56, 70 |
| Conread position: | 26-381 |
| Cow position: | chr25:33157494-33157139 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 71, 63 |
| Conread position: | 26-381 |
| Cow position: | chr25:33298710-33299065 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 52, 70 |
| Conread position: | 26-381 |
| Cow position: | chr25:33298794-33299149 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 54, 71 |
| Conread position: | 26-381 |
| Cow position: | chr25:33298878-33299233 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 140, 158 |
| Conread position: | 26-381 |
| Cow position: | chr25:33299046-33299401 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 79, 56 |
| Conread position: | 26-381 |
| Cow position: | chr25:33299130-33299485 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 60, 66 |
| Conread position: | 26-381 |
| Cow position: | chr25:33299298-33299653 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 243 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 26-381 |
| Cow position: | chr25:33305421-33305073 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 26-381 |
| Cow position: | chr25:33305901-33305552 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 26-381 |
| Cow position: | chr25:34447085-34447440 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 325, 314 |
| Conread position: | 26-381 |
| Cow position: | chr25:34769809-34769454 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-381 |
| Cow position: | chr25:34770061-34769706 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 163 |
| Conread position: | 26-381 |
| Cow position: | chr25:34770145-34769790 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 65, 69 |
| Conread position: | 29-336 |
| Cow position: | chr25:33306396-33306098 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 141, 56 |
| Conread position: | 32-336 |
| Cow position: | chr25:36800614-36800920 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 12, 74 |
| Conread position: | 33-296 |
| Cow position: | chr25:33145168-33145431 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-381 |
| Cow position: | chr25:36800783-36801133 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 13, 58 |
| Conread position: | 35-381 |
| Cow position: | chr25:33127706-33128052 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-381 |
| Cow position: | chr25:34447181-34447524 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 322, 312 |
| Conread position: | 40-331 |
| Cow position: | chr25:34732615-34732324 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-336 |
| Cow position: | chr25:33144846-33145135 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 192, 0 |
| Conread position: | 44-381 |
| Cow position: | chr25:36801372-36801709 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 302, 290 |
| Conread position: | 46-376 |
| Cow position: | chr25:34732105-34731775 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 115, 137 |
| Conread position: | 47-381 |
| Cow position: | chr25:22235829-22236163 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 308, 303 |
| Conread position: | 68-381 |
| Cow position: | chr25:23420320-23420633 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 30, 39 |
| Conread position: | 92-381 |
| Cow position: | chr25:33145059-33145348 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 93, 86 |
| Conread position: | 110-381 |
| Cow position: | chr25:326986-327257 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 62 |
| Conread position: | 127-381 |
| Cow position: | chr25:33298477-33298729 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 207, 9 |
| Conread position: | 128-378 |
| Cow position: | chr25:33144846-33145093 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 171, 166 |
| Conread position: | 137-381 |
| Cow position: | chr25:33298569-33298813 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 189, 217 |
Show alignments to all cow chromosomes.