Cow genome map
| Conread name: | rfbs3940b_b12.y1 |
| Conread position: | 8-299 |
| Cow position: | chr28:9253316-9253607 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 103, 96 |
| Conread position: | 8-330 |
| Cow position: | chr28:33210273-33210596 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 74, 85 |
| Conread position: | 8-381 |
| Cow position: | chr28:11334092-11333719 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 87 |
| Conread position: | 11-336 |
| Cow position: | chr28:7810555-7810880 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 174, 159 |
| Conread position: | 11-381 |
| Cow position: | chr28:7757632-7758002 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 251 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 10, 16 |
| Conread position: | 11-381 |
| Cow position: | chr28:7757716-7758086 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 243 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 92, 100 |
| Conread position: | 11-381 |
| Cow position: | chr28:9290136-9290500 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 250 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 67, 92 |
| Conread position: | 17-381 |
| Cow position: | chr28:9299121-9299471 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 318, 65 |
| Conread position: | 18-300 |
| Cow position: | chr28:9299275-9299558 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 90 |
| Conread position: | 25-329 |
| Cow position: | chr28:34695890-34696194 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 94, 79 |
| Conread position: | 25-381 |
| Cow position: | chr28:34696058-34696414 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 47, 40 |
| Conread position: | 26-326 |
| Cow position: | chr28:7810327-7810618 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 210, 0 |
| Conread position: | 26-330 |
| Cow position: | chr28:34696227-34696531 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 123, 127 |
| Conread position: | 26-331 |
| Cow position: | chr28:9298880-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 26-335 |
| Cow position: | chr28:9290067-9290373 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 40, 56 |
| Conread position: | 26-336 |
| Cow position: | chr28:7757479-7757789 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 26-336 |
| Cow position: | chr28:7757563-7757873 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 215 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 62, 70 |
| Conread position: | 26-336 |
| Cow position: | chr28:34673418-34673728 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 85, 79 |
| Conread position: | 26-337 |
| Cow position: | chr28:7758387-7758699 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 160 |
| Conread position: | 26-338 |
| Cow position: | chr28:7757899-7758212 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 26-340 |
| Cow position: | chr28:11333822-11333508 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 159, 143 |
| Conread position: | 26-377 |
| Cow position: | chr28:7757983-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 26-377 |
| Cow position: | chr28:11333738-11333393 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 73, 54 |
| Conread position: | 26-378 |
| Cow position: | chr28:7758471-7758822 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 62, 85 |
| Conread position: | 26-379 |
| Cow position: | chr28:9253250-9253603 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 67 |
| Conread position: | 26-381 |
| Cow position: | chr28:7757815-7758170 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 26-381 |
| Cow position: | chr28:7810411-7810757 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 173, 124 |
| Conread position: | 26-381 |
| Cow position: | chr28:9252748-9253101 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 52, 70 |
| Conread position: | 26-381 |
| Cow position: | chr28:9253082-9253437 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 56, 81 |
| Conread position: | 26-381 |
| Cow position: | chr28:9253166-9253521 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 26-381 |
| Cow position: | chr28:9290233-9290584 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 60, 27 |
| Conread position: | 26-381 |
| Cow position: | chr28:9298713-9299065 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 60, 69 |
| Conread position: | 26-381 |
| Cow position: | chr28:11333990-11333635 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 302, 322 |
| Conread position: | 26-381 |
| Cow position: | chr28:34696143-34696498 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 254, 247 |
| Conread position: | 28-317 |
| Cow position: | chr28:7810656-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 161, 142 |
| Conread position: | 28-336 |
| Cow position: | chr28:9290400-9290707 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 146, 61 |
| Conread position: | 28-381 |
| Cow position: | chr28:7757397-7757750 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 106, 115 |
| Conread position: | 32-381 |
| Cow position: | chr28:9253004-9253353 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 316 |
| Conread position: | 34-330 |
| Cow position: | chr28:34695983-34696279 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 38-293 |
| Cow position: | chr28:34696323-34696578 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 240, 235 |
| Conread position: | 43-381 |
| Cow position: | chr28:9299217-9299555 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 43-381 |
| Cow position: | chr28:33210223-33210562 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 45-316 |
| Cow position: | chr28:34673353-34673624 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 60, 66 |
| Conread position: | 46-381 |
| Cow position: | chr28:7758323-7758658 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 200 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 130, 143 |
| Conread position: | 68-375 |
| Cow position: | chr28:7810528-7810835 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 36, 43 |
| Conread position: | 77-336 |
| Cow position: | chr28:9298599-9298854 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 110-316 |
| Cow position: | chr28:7810327-7810533 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 60, 73 |
| Conread position: | 110-337 |
| Cow position: | chr28:9252913-9253141 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 151-338 |
| Cow position: | chr28:7810284-7810471 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.