Cow genome map
| Conread name: | rfbs3940b_b12.y1 |
| Conread position: | 1-336 |
| Cow position: | chr7:3180491-3180824 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 1-381 |
| Cow position: | chr7:1014893-1015273 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 247 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 110, 103 |
| Conread position: | 5-381 |
| Cow position: | chr7:1014729-1015105 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-336 |
| Cow position: | chr7:1015151-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 179 |
| Conread position: | 7-381 |
| Cow position: | chr7:3179993-3180367 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-335 |
| Cow position: | chr7:1015068-1015396 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 182 |
| Conread position: | 8-381 |
| Cow position: | chr7:3179742-3180115 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 177 |
| Conread position: | 8-381 |
| Cow position: | chr7:3179826-3180199 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 177 |
| Conread position: | 8-381 |
| Cow position: | chr7:3180330-3180703 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 250 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 90, 103 |
| Conread position: | 8-381 |
| Cow position: | chr7:11600806-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 269, 250 |
| Conread position: | 8-381 |
| Cow position: | chr7:18390291-18390664 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 242 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 90, 99 |
| Conread position: | 9-341 |
| Cow position: | chr7:3180079-3180411 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 176 |
| Conread position: | 10-381 |
| Cow position: | chr7:3180248-3180619 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 11-381 |
| Cow position: | chr7:11601139-11600769 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 151, 174 |
| Conread position: | 15-261 |
| Cow position: | chr7:1440026-1440272 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 176, 162 |
| Conread position: | 15-291 |
| Cow position: | chr7:1014325-1014601 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 163, 179 |
| Conread position: | 15-326 |
| Cow position: | chr7:42879056-42878745 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 7 |
| Conread position: | 15-336 |
| Cow position: | chr7:8277900-8278221 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 76, 80 |
| Conread position: | 15-336 |
| Cow position: | chr7:8325037-8325358 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 157, 176 |
| Conread position: | 15-381 |
| Cow position: | chr7:1438302-1438667 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 77, 11 |
| Conread position: | 15-381 |
| Cow position: | chr7:18390214-18390580 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 147, 170 |
| Conread position: | 15-381 |
| Cow position: | chr7:42878973-42878606 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 92 |
| Conread position: | 18-331 |
| Cow position: | chr7:8277735-8278048 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 145, 167 |
| Conread position: | 19-375 |
| Cow position: | chr7:42878633-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 8, 78 |
| Conread position: | 19-381 |
| Cow position: | chr7:1014994-1015357 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 238 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 8, 167 |
| Conread position: | 19-381 |
| Cow position: | chr7:42878801-42878438 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 79 |
| Conread position: | 22-378 |
| Cow position: | chr7:11601212-11600856 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 58, 65 |
| Conread position: | 22-381 |
| Cow position: | chr7:42878882-42878522 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 5, 75 |
| Conread position: | 26-252 |
| Cow position: | chr7:8325888-8326114 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-336 |
| Cow position: | chr7:8277659-8277969 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 159, 133 |
| Conread position: | 26-336 |
| Cow position: | chr7:8324964-8325274 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 252, 230 |
| Conread position: | 26-336 |
| Cow position: | chr7:42879129-42878819 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 80 |
| Conread position: | 26-337 |
| Cow position: | chr7:1439954-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 17 |
| Conread position: | 26-340 |
| Cow position: | chr7:1438396-1438710 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 56, 75 |
| Conread position: | 26-381 |
| Cow position: | chr7:1439704-1440056 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 26-381 |
| Cow position: | chr7:1439870-1440224 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 150, 105 |
| Conread position: | 26-381 |
| Cow position: | chr7:3179928-3180283 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 159 |
| Conread position: | 26-381 |
| Cow position: | chr7:3180180-3180535 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 85, 80 |
| Conread position: | 26-381 |
| Cow position: | chr7:8277407-8277762 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 113, 106 |
| Conread position: | 26-381 |
| Cow position: | chr7:8325636-8325991 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 136, 164 |
| Conread position: | 26-381 |
| Cow position: | chr7:11600956-11600601 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 63, 54 |
| Conread position: | 26-381 |
| Cow position: | chr7:18390057-18390412 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 77, 63 |
| Conread position: | 26-381 |
| Cow position: | chr7:42878709-42878354 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 26-381 |
| Cow position: | chr7:42879213-42878858 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 28-377 |
| Cow position: | chr7:1439451-1439802 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 226, 143 |
| Conread position: | 28-381 |
| Cow position: | chr7:1014668-1015021 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 135, 157 |
| Conread position: | 30-340 |
| Cow position: | chr7:18390481-18390792 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 248, 242 |
| Conread position: | 30-381 |
| Cow position: | chr7:11600868-11600517 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 167, 142 |
| Conread position: | 31-381 |
| Cow position: | chr7:8325473-8325823 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 141, 160 |
| Conread position: | 32-381 |
| Cow position: | chr7:3180438-3180787 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 83 |
| Conread position: | 32-381 |
| Cow position: | chr7:8325306-8325655 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 160, 138 |
| Conread position: | 37-336 |
| Cow position: | chr7:8277838-8278137 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 139, 156 |
| Conread position: | 38-331 |
| Cow position: | chr7:8243545-8243838 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 40, 51 |
| Conread position: | 38-381 |
| Cow position: | chr7:8325732-8326075 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 237, 228 |
| Conread position: | 39-381 |
| Cow position: | chr7:18390156-18390496 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 229 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 41-375 |
| Cow position: | chr7:1014267-1014601 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 48, 55 |
| Conread position: | 43-331 |
| Cow position: | chr7:8324729-8325017 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 46 |
| Conread position: | 46-381 |
| Cow position: | chr7:8324816-8325151 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 57, 49 |
| Conread position: | 46-381 |
| Cow position: | chr7:42879447-42879110 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 5, 51 |
| Conread position: | 50-381 |
| Cow position: | chr7:3179700-3180031 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 31, 43 |
| Conread position: | 106-381 |
| Cow position: | chr7:11601212-11600937 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 58, 73 |
| Conread position: | 111-381 |
| Cow position: | chr7:42879296-42879026 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 17, 28 |
Show alignments to all cow chromosomes.