Cow genome map

Conread name: rfce09c_d13.y1

Conread position: 15-218
Cow position: chr15:22531867-22531663 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 139
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 118

Conread position: 17-218
Cow position: chr15:45584929-45584729 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 91

Conread position: 19-198
Cow position: chr15:43114517-43114710 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 18, 52

Conread position: 41-212
Cow position: chr15:21941666-21941842 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 54, 14

Conread position: 41-218
Cow position: chr15:41527798-41527976 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 5, 17

Conread position: 43-213
Cow position: chr15:12359212-12359036 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 112, 56

Conread position: 43-214
Cow position: chr15:4418226-4418399 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 115, 55

Conread position: 43-218
Cow position: chr15:26573554-26573375 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 117, 58

Conread position: 43-254
Cow position: chr15:19186444-19186651 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 144
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 170, 51

Conread position: 45-160
Cow position: chr15:5632857-5632745 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 45-198
Cow position: chr15:40798254-40798407 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 115, 53

Conread position: 45-206
Cow position: chr15:18671278-18671447 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 45-211
Cow position: chr15:17233366-17233197 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 115, 54

Conread position: 45-213
Cow position: chr15:1329928-1330101 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 45-213
Cow position: chr15:21893956-21893781 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 55, 0

Conread position: 45-213
Cow position: chr15:35204974-35205151 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 89, 55

Conread position: 45-213
Cow position: chr15:50322770-50322596 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 47, 0

Conread position: 45-214
Cow position: chr15:4138307-4138137 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 63, 93

Conread position: 45-214
Cow position: chr15:10088492-10088320 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 113, 44

Conread position: 45-214
Cow position: chr15:21388994-21389163 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 115, 60

Conread position: 45-214
Cow position: chr15:23768090-23768256 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 115, 31

Conread position: 45-214
Cow position: chr15:35440901-35441077 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 138
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 58, 0

Conread position: 45-214
Cow position: chr15:41418657-41418827 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 56, 136

Conread position: 45-215
Cow position: chr15:11559181-11559355 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 46

Conread position: 45-215
Cow position: chr15:36773524-36773693 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 57

Conread position: 45-218
Cow position: chr15:608319-608142 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 115, 46

Conread position: 45-218
Cow position: chr15:794840-795025 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 45-218
Cow position: chr15:1804161-1804342 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 78, 47

Conread position: 45-218
Cow position: chr15:9781638-9781467 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 170, 33

Conread position: 45-218
Cow position: chr15:10608131-10608309 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 9, 14

Conread position: 45-218
Cow position: chr15:11995852-11996031 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 14

Conread position: 45-218
Cow position: chr15:12870690-12870868 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 114, 0

Conread position: 45-218
Cow position: chr15:13554528-13554349 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 45-218
Cow position: chr15:16927923-16928098 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 110, 12

Conread position: 45-218
Cow position: chr15:21821752-21821928 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 114, 12

Conread position: 45-218
Cow position: chr15:22939150-22939329 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 53, 33

Conread position: 45-218
Cow position: chr15:31928724-31928900 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 9, 14

Conread position: 45-218
Cow position: chr15:39621515-39621334 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 45-218
Cow position: chr15:43599362-43599185 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 55, 15

Conread position: 45-219
Cow position: chr15:34284237-34284414 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 111, 23

Conread position: 45-229
Cow position: chr15:39599616-39599432 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 170, 60

Conread position: 45-243
Cow position: chr15:9107210-9107007 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 55, 187

Conread position: 45-254
Cow position: chr15:32324032-32324241 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 50, 33

Conread position: 46-213
Cow position: chr15:10660378-10660553 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 46-214
Cow position: chr15:5234830-5234996 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 20, 0

Conread position: 46-214
Cow position: chr15:38883325-38883150 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 46-215
Cow position: chr15:22871779-22871614 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 46-218
Cow position: chr15:1297911-1297735 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 114, 63

Conread position: 53-218
Cow position: chr15:5930056-5929894 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 162, 5

Conread position: 56-163
Cow position: chr15:19119441-19119555 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 56-163
Cow position: chr15:36782164-36782269 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 56-164
Cow position: chr15:12441661-12441770 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 56-174
Cow position: chr15:17859073-17859185 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 56-194
Cow position: chr15:12655750-12655902 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 36, 66

Conread position: 56-196
Cow position: chr15:5727818-5727667 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 56-202
Cow position: chr15:16667335-16667489 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 49, 129

Conread position: 56-206
Cow position: chr15:5717876-5717719 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 39, 142

Conread position: 56-211
Cow position: chr15:53164184-53164025 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 104, 0

Conread position: 56-212
Cow position: chr15:225642-225801 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 18

Conread position: 56-213
Cow position: chr15:6970152-6969989 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 56-213
Cow position: chr15:26911913-26912070 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 56-214
Cow position: chr15:27900345-27900509 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 56-215
Cow position: chr15:20422616-20422778 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 36, 0

Conread position: 56-216
Cow position: chr15:52380456-52380293 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 124

Conread position: 56-218
Cow position: chr15:662304-662472 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 17, 39

Conread position: 56-218
Cow position: chr15:5726487-5726321 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 101, 50

Conread position: 56-218
Cow position: chr15:17100547-17100713 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 104, 0

Conread position: 56-218
Cow position: chr15:20459141-20459312 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 56-218
Cow position: chr15:26919112-26919279 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 101, 0

Conread position: 56-218
Cow position: chr15:29810281-29810119 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 157, 23

Conread position: 56-218
Cow position: chr15:31043032-31042863 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 33, 24

Conread position: 56-218
Cow position: chr15:49922299-49922130 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 56-219
Cow position: chr15:35945692-35945525 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 38, 46

Conread position: 56-229
Cow position: chr15:16603986-16603810 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 36, 89

Conread position: 56-243
Cow position: chr15:27973054-27973241 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 52, 44

Conread position: 57-213
Cow position: chr15:5158537-5158376 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 31

Conread position: 57-214
Cow position: chr15:13285181-13285022 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 103, 43

Conread position: 57-218
Cow position: chr15:9497337-9497504 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 57-218
Cow position: chr15:14176337-14176503 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 133
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 103, 0

Conread position: 57-218
Cow position: chr15:20351993-20351828 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 103, 48

Conread position: 57-218
Cow position: chr15:39286250-39286412 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 101, 21

Conread position: 57-218
Cow position: chr15:49274114-49273954 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 115, 44

Conread position: 58-212
Cow position: chr15:22136847-22136693 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 43, 110

Conread position: 58-213
Cow position: chr15:22553377-22553539 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 58-214
Cow position: chr15:39405899-39405745 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 97, 43

Conread position: 58-216
Cow position: chr15:16583536-16583694 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 28

Conread position: 58-218
Cow position: chr15:21803499-21803661 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 46, 139

Conread position: 59-218
Cow position: chr15:20487045-20487207 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 98, 41

Conread position: 60-213
Cow position: chr15:44641056-44640898 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 62-158
Cow position: chr15:14856309-14856406 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 83
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 62-218
Cow position: chr15:43626625-43626465 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 100, 44

Conread position: 64-218
Cow position: chr15:28823659-28823822 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 75, 45

Conread position: 65-197
Cow position: chr15:31560242-31560377 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 85-229
Cow position: chr15:14261125-14261272 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 71, 0

Show alignments to all cow chromosomes.