Cow genome map

Conread name: rfce09c_d13.y1

Conread position: 14-229
Cow position: chr17:38263568-38263345 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 80, 43

Conread position: 21-231
Cow position: chr17:28982108-28982326 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 15, 168

Conread position: 43-164
Cow position: chr17:4786542-4786422 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 43-213
Cow position: chr17:9117600-9117772 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 92, 52

Conread position: 43-214
Cow position: chr17:18720496-18720318 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 11, 16

Conread position: 43-214
Cow position: chr17:21738922-21738745 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 59, 0

Conread position: 43-214
Cow position: chr17:33275797-33275621 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 11, 17

Conread position: 43-215
Cow position: chr17:40289042-40288870 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 117, 36

Conread position: 43-218
Cow position: chr17:7590504-7590329 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 123, 11

Conread position: 43-218
Cow position: chr17:7654503-7654317 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 43-218
Cow position: chr17:7760512-7760339 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 172, 39

Conread position: 43-218
Cow position: chr17:20810536-20810356 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 87

Conread position: 43-218
Cow position: chr17:25032530-25032348 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 25, 50

Conread position: 45-157
Cow position: chr17:3471376-3471487 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 45-158
Cow position: chr17:28539985-28540099 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 45-162
Cow position: chr17:24550132-24550250 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 45-163
Cow position: chr17:18860767-18860647 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 45-169
Cow position: chr17:6624214-6624337 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 115, 21

Conread position: 45-178
Cow position: chr17:21959731-21959595 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 115, 53

Conread position: 45-184
Cow position: chr17:1113846-1113987 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 115, 46

Conread position: 45-196
Cow position: chr17:8690486-8690334 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 63, 0

Conread position: 45-196
Cow position: chr17:22564137-22564303 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 47, 147

Conread position: 45-196
Cow position: chr17:38363031-38362879 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 50, 135

Conread position: 45-198
Cow position: chr17:1469331-1469495 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 131
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 56, 0

Conread position: 45-213
Cow position: chr17:11215276-11215104 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 56, 0

Conread position: 45-213
Cow position: chr17:11215936-11215766 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 151

Conread position: 45-213
Cow position: chr17:21293085-21292916 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 49, 30

Conread position: 45-213
Cow position: chr17:24883612-24883443 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 112, 52

Conread position: 45-213
Cow position: chr17:31856626-31856801 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 55, 0

Conread position: 45-214
Cow position: chr17:1035642-1035468 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 123
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 45-214
Cow position: chr17:2810581-2810761 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 45-214
Cow position: chr17:21628435-21628606 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 62, 53

Conread position: 45-214
Cow position: chr17:25097418-25097584 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 95, 0

Conread position: 45-214
Cow position: chr17:25189243-25189414 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 0

Conread position: 45-214
Cow position: chr17:30665227-30665401 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 45-214
Cow position: chr17:30718463-30718289 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 55, 36

Conread position: 45-214
Cow position: chr17:34948594-34948763 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 14

Conread position: 45-214
Cow position: chr17:36275293-36275462 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 112, 43

Conread position: 45-214
Cow position: chr17:37816235-37816064 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 112, 56

Conread position: 45-215
Cow position: chr17:20884478-20884653 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 56, 0

Conread position: 45-217
Cow position: chr17:40741604-40741784 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 98, 0

Conread position: 45-218
Cow position: chr17:7698009-7698181 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 126, 33

Conread position: 45-218
Cow position: chr17:10458982-10458798 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 47, 0

Conread position: 45-218
Cow position: chr17:17410246-17410427 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 59, 0

Conread position: 45-218
Cow position: chr17:20874349-20874530 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 77

Conread position: 45-218
Cow position: chr17:20993084-20992908 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 47, 103

Conread position: 45-218
Cow position: chr17:21755474-21755301 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 125, 62

Conread position: 45-218
Cow position: chr17:22245947-22246122 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 115, 55

Conread position: 45-218
Cow position: chr17:24077359-24077535 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 56, 82

Conread position: 45-218
Cow position: chr17:25126307-25126484 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 117, 56

Conread position: 45-218
Cow position: chr17:26000072-26000251 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 143

Conread position: 45-218
Cow position: chr17:27058600-27058423 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 112, 56

Conread position: 45-218
Cow position: chr17:27203088-27202912 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 140
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 115, 55

Conread position: 45-218
Cow position: chr17:39715113-39715289 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 148

Conread position: 45-218
Cow position: chr17:40771792-40771964 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 48, 56

Conread position: 45-229
Cow position: chr17:2275430-2275615 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 33, 52

Conread position: 45-229
Cow position: chr17:24580341-24580150 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 154

Conread position: 45-229
Cow position: chr17:32349028-32349212 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 56, 29

Conread position: 45-242
Cow position: chr17:7142821-7143019 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 113, 28

Conread position: 45-253
Cow position: chr17:23798234-23798451 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 50, 198

Conread position: 46-139
Cow position: chr17:21312854-21312759 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 82
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 46-218
Cow position: chr17:4213702-4213877 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 114, 33

Conread position: 46-276
Cow position: chr17:17193450-17193675 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 159
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 11

Conread position: 47-158
Cow position: chr17:27048116-27048225 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 93
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 47-208
Cow position: chr17:11101842-11101684 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 116, 10

Conread position: 47-209
Cow position: chr17:923835-924003 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 51, 145

Conread position: 47-213
Cow position: chr17:40312666-40312833 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 57, 12

Conread position: 47-214
Cow position: chr17:949932-950100 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 46, 15

Conread position: 55-218
Cow position: chr17:1493185-1493015 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 55-218
Cow position: chr17:11839681-11839856 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 55-218
Cow position: chr17:28814534-28814359 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 56-156
Cow position: chr17:1353365-1353464 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 83
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 56-202
Cow position: chr17:2034496-2034646 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 100, 133

Conread position: 56-214
Cow position: chr17:9770477-9770632 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 52, 88

Conread position: 56-214
Cow position: chr17:26448509-26448671 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 21, 141

Conread position: 56-218
Cow position: chr17:9746481-9746646 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 44, 140

Conread position: 56-218
Cow position: chr17:16158457-16158625 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 56-218
Cow position: chr17:21489657-21489491 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 36, 87

Conread position: 56-229
Cow position: chr17:20848489-20848667 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 47, 17

Conread position: 56-231
Cow position: chr17:10432010-10431827 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 101, 46

Conread position: 57-213
Cow position: chr17:6936708-6936553 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 37, 22

Conread position: 57-213
Cow position: chr17:20932297-20932459 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 43, 142

Conread position: 57-213
Cow position: chr17:21922666-21922506 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 100, 133

Conread position: 57-214
Cow position: chr17:15684480-15684639 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 51

Conread position: 57-218
Cow position: chr17:9853954-9854110 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 156, 45

Conread position: 58-213
Cow position: chr17:14848577-14848411 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 58-214
Cow position: chr17:21495345-21495500 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 49, 85

Conread position: 59-213
Cow position: chr17:3782013-3782171 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 59-218
Cow position: chr17:9565277-9565435 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 156, 84

Conread position: 59-256
Cow position: chr17:25502079-25502285 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 147
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 61-218
Cow position: chr17:21806480-21806318 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 99, 0

Conread position: 61-218
Cow position: chr17:27303987-27303835 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 95, 39

Conread position: 62-164
Cow position: chr17:21604386-21604488 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 63-213
Cow position: chr17:9911730-9911885 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 72-214
Cow position: chr17:34836152-34836300 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 29, 0

Show alignments to all cow chromosomes.