Cow genome map
| Conread name: | rfce09c_d13.y1 |
| Conread position: | 19-215 |
| Cow position: | chr20:3599464-3599266 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 33-224 |
| Cow position: | chr20:33439030-33438838 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 127, 45 |
| Conread position: | 41-247 |
| Cow position: | chr20:5950688-5950480 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 119, 76 |
| Conread position: | 42-214 |
| Cow position: | chr20:36633773-36633943 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 43-214 |
| Cow position: | chr20:11188843-11188676 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 43-214 |
| Cow position: | chr20:30119618-30119446 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 164 |
| Conread position: | 43-218 |
| Cow position: | chr20:22484818-22484995 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 43-218 |
| Cow position: | chr20:40781923-40782097 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 117, 45 |
| Conread position: | 43-242 |
| Cow position: | chr20:36779773-36779572 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 114, 188 |
| Conread position: | 44-197 |
| Cow position: | chr20:40726633-40726484 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 57, 111 |
| Conread position: | 44-218 |
| Cow position: | chr20:34098002-34097817 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 45-153 |
| Cow position: | chr20:28831926-28832037 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 45-157 |
| Cow position: | chr20:17904117-17904229 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 58 |
| Conread position: | 45-157 |
| Cow position: | chr20:37357564-37357678 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 45-158 |
| Cow position: | chr20:22704249-22704366 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 45-163 |
| Cow position: | chr20:13967302-13967180 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 45-163 |
| Cow position: | chr20:33144595-33144477 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-164 |
| Cow position: | chr20:21714713-21714833 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 45-178 |
| Cow position: | chr20:23103177-23103318 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 45-211 |
| Cow position: | chr20:23541200-23541032 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 45-213 |
| Cow position: | chr20:6240564-6240391 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 146 |
| Conread position: | 45-213 |
| Cow position: | chr20:15565868-15565699 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 111, 56 |
| Conread position: | 45-213 |
| Cow position: | chr20:24000840-24000666 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 45-214 |
| Cow position: | chr20:6602997-6603172 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 94 |
| Conread position: | 45-214 |
| Cow position: | chr20:16492029-16492204 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 45-214 |
| Cow position: | chr20:20983954-20984123 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 113, 50 |
| Conread position: | 45-214 |
| Cow position: | chr20:21345385-21345564 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 150 |
| Conread position: | 45-214 |
| Cow position: | chr20:21928863-21929036 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 45-214 |
| Cow position: | chr20:28594240-28594418 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 148 |
| Conread position: | 45-215 |
| Cow position: | chr20:20056527-20056354 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 62, 76 |
| Conread position: | 45-215 |
| Cow position: | chr20:29845008-29845183 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 63, 12 |
| Conread position: | 45-215 |
| Cow position: | chr20:35145979-35146153 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 45-218 |
| Cow position: | chr20:354939-354765 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 49, 57 |
| Conread position: | 45-218 |
| Cow position: | chr20:6096536-6096359 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 112, 61 |
| Conread position: | 45-218 |
| Cow position: | chr20:9433543-9433723 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 45-218 |
| Cow position: | chr20:11135804-11135617 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 45-218 |
| Cow position: | chr20:14759703-14759529 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 113, 52 |
| Conread position: | 45-218 |
| Cow position: | chr20:19751265-19751443 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 45-218 |
| Cow position: | chr20:20898633-20898454 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 56, 36 |
| Conread position: | 45-218 |
| Cow position: | chr20:23506512-23506335 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 45-224 |
| Cow position: | chr20:35797566-35797750 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 56, 176 |
| Conread position: | 45-229 |
| Cow position: | chr20:18392303-18392124 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 171, 52 |
| Conread position: | 45-229 |
| Cow position: | chr20:34108069-34108252 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 95, 80 |
| Conread position: | 45-241 |
| Cow position: | chr20:11482177-11481979 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 60, 170 |
| Conread position: | 45-243 |
| Cow position: | chr20:10772161-10772366 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 46-158 |
| Cow position: | chr20:33435208-33435093 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 46-215 |
| Cow position: | chr20:12996052-12995874 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 150 |
| Conread position: | 46-215 |
| Cow position: | chr20:15568987-15568817 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 115, 36 |
| Conread position: | 46-218 |
| Cow position: | chr20:7442169-7442000 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 146, 55 |
| Conread position: | 46-218 |
| Cow position: | chr20:16548319-16548142 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 46-218 |
| Cow position: | chr20:28067468-28067288 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 46-218 |
| Cow position: | chr20:33067407-33067224 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 47-196 |
| Cow position: | chr20:4621385-4621234 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 101 |
| Conread position: | 48-202 |
| Cow position: | chr20:36741437-36741589 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 48-218 |
| Cow position: | chr20:23064869-23064699 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 56, 10 |
| Conread position: | 49-243 |
| Cow position: | chr20:13652405-13652209 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 57 |
| Conread position: | 56-164 |
| Cow position: | chr20:6890683-6890791 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-178 |
| Cow position: | chr20:35958614-35958743 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 56-211 |
| Cow position: | chr20:21428128-21428290 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 56-218 |
| Cow position: | chr20:17251684-17251853 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 56-218 |
| Cow position: | chr20:34777148-34777316 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 56-218 |
| Cow position: | chr20:40157869-40158036 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 57-179 |
| Cow position: | chr20:11514909-11514795 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 57-211 |
| Cow position: | chr20:6423941-6424095 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 57-212 |
| Cow position: | chr20:34001423-34001261 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 57-218 |
| Cow position: | chr20:4945277-4945118 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 100, 24 |
| Conread position: | 57-218 |
| Cow position: | chr20:7709816-7709645 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 41, 64 |
| Conread position: | 57-218 |
| Cow position: | chr20:9537106-9537268 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 52, 111 |
| Conread position: | 57-218 |
| Cow position: | chr20:11359660-11359496 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 97, 50 |
| Conread position: | 57-218 |
| Cow position: | chr20:16941321-16941152 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 58-214 |
| Cow position: | chr20:17765358-17765200 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 99, 37 |
| Conread position: | 58-218 |
| Cow position: | chr20:20967289-20967457 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 58-218 |
| Cow position: | chr20:29805691-29805523 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 59-218 |
| Cow position: | chr20:22959372-22959212 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 101, 49 |
| Conread position: | 66-214 |
| Cow position: | chr20:12126326-12126173 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 68-229 |
| Cow position: | chr20:6372581-6372416 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 117 |
| Conread position: | 85-218 |
| Cow position: | chr20:5364925-5365062 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.