Cow genome map

Conread name: rfce09c_d13.y1

Conread position: 10-218
Cow position: chr23:11129113-11129329 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 10, 45

Conread position: 15-215
Cow position: chr23:6223870-6224065 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 148, 42

Conread position: 28-157
Cow position: chr23:26694847-26694715 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 5, 0

Conread position: 42-244
Cow position: chr23:1767743-1767949 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 61

Conread position: 43-164
Cow position: chr23:40844567-40844687 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 43-218
Cow position: chr23:18402374-18402194 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 139
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 116, 0

Conread position: 45-157
Cow position: chr23:1921309-1921197 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 95
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 45-166
Cow position: chr23:1670818-1670941 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 45-175
Cow position: chr23:3522667-3522802 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 47, 0

Conread position: 45-178
Cow position: chr23:34356560-34356697 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 86, 53

Conread position: 45-179
Cow position: chr23:33711678-33711816 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 115, 0

Conread position: 45-196
Cow position: chr23:6592783-6592628 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 45-198
Cow position: chr23:3244999-3244838 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 45-211
Cow position: chr23:5723461-5723632 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 45-213
Cow position: chr23:1885255-1885083 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 121, 0

Conread position: 45-213
Cow position: chr23:10014455-10014619 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 9, 14

Conread position: 45-213
Cow position: chr23:20002171-20002344 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 45-213
Cow position: chr23:36309337-36309510 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 45-214
Cow position: chr23:21446036-21446207 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 9, 14

Conread position: 45-214
Cow position: chr23:33153273-33153099 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 112, 55

Conread position: 45-214
Cow position: chr23:37065759-37065940 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 45-214
Cow position: chr23:38455265-38455088 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 50, 0

Conread position: 45-215
Cow position: chr23:22804642-22804816 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 115, 0

Conread position: 45-215
Cow position: chr23:23409656-23409824 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 115, 53

Conread position: 45-218
Cow position: chr23:1655811-1655990 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 57, 0

Conread position: 45-218
Cow position: chr23:3262579-3262402 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 114, 0

Conread position: 45-218
Cow position: chr23:4795089-4795265 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 130

Conread position: 45-218
Cow position: chr23:5162344-5162525 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 138
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 50, 148

Conread position: 45-218
Cow position: chr23:15743008-15743186 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 48, 34

Conread position: 45-218
Cow position: chr23:16700122-16699946 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 115, 59

Conread position: 45-218
Cow position: chr23:29069526-29069345 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 45-218
Cow position: chr23:33601611-33601441 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 64, 91

Conread position: 45-229
Cow position: chr23:1923920-1923730 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 63, 77

Conread position: 45-229
Cow position: chr23:9734331-9734515 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 115, 52

Conread position: 45-232
Cow position: chr23:25378571-25378758 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 115, 50

Conread position: 45-242
Cow position: chr23:27544745-27544945 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 113, 186

Conread position: 45-244
Cow position: chr23:13599261-13599460 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 145
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 115, 56

Conread position: 45-244
Cow position: chr23:24704198-24704411 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 56, 156

Conread position: 45-253
Cow position: chr23:36172438-36172653 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 110, 52

Conread position: 45-254
Cow position: chr23:38208642-38208856 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 55, 146

Conread position: 46-183
Cow position: chr23:9594913-9594776 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 109, 59

Conread position: 46-218
Cow position: chr23:1742274-1742449 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 46, 142

Conread position: 48-160
Cow position: chr23:14164480-14164365 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 47, 11

Conread position: 48-161
Cow position: chr23:22573996-22573883 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 105, 9

Conread position: 48-218
Cow position: chr23:4726708-4726887 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 47, 9

Conread position: 55-178
Cow position: chr23:19173427-19173309 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 56-210
Cow position: chr23:38973775-38973934 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 56-211
Cow position: chr23:6035363-6035528 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 56-215
Cow position: chr23:6995055-6994891 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 56-215
Cow position: chr23:39083377-39083543 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 56-215
Cow position: chr23:39780683-39780846 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 128
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 37, 21

Conread position: 56-218
Cow position: chr23:306446-306618 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 56-218
Cow position: chr23:307379-307551 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 56-218
Cow position: chr23:1398107-1397943 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 104, 5

Conread position: 56-218
Cow position: chr23:30950884-30951051 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 104, 42

Conread position: 56-218
Cow position: chr23:35247293-35247463 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 37, 0

Conread position: 56-218
Cow position: chr23:39753045-39753210 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 47, 7

Conread position: 56-229
Cow position: chr23:19774701-19774875 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 106, 36

Conread position: 56-229
Cow position: chr23:29345833-29345662 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 159, 44

Conread position: 56-245
Cow position: chr23:19371143-19370952 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 94, 44

Conread position: 58-211
Cow position: chr23:15287208-15287049 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 43, 133

Conread position: 58-218
Cow position: chr23:13555508-13555344 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 48, 136

Conread position: 59-229
Cow position: chr23:5603354-5603178 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 44, 139

Conread position: 59-248
Cow position: chr23:22298105-22297914 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 36, 13

Conread position: 60-164
Cow position: chr23:39520518-39520412 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 60-234
Cow position: chr23:4562817-4562995 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 47, 168

Conread position: 62-214
Cow position: chr23:5436711-5436552 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 43, 140

Conread position: 68-214
Cow position: chr23:4528940-4528786 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 33, 0

Conread position: 72-218
Cow position: chr23:21309469-21309317 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 73-218
Cow position: chr23:3244522-3244373 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 84, 33

Conread position: 89-299
Cow position: chr23:25371789-25372003 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 71, 27

Show alignments to all cow chromosomes.