Cow genome map

Conread name: rfce09c_d13.y1

Conread position: 13-214
Cow position: chr5:59115295-59115496 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 21, 34

Conread position: 14-214
Cow position: chr5:29353225-29353011 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 11

Conread position: 15-163
Cow position: chr5:31918557-31918702 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 19-251
Cow position: chr5:22643308-22643084 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 65, 15

Conread position: 43-202
Cow position: chr5:21920314-21920483 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 14

Conread position: 43-213
Cow position: chr5:41165024-41165208 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 43-229
Cow position: chr5:64758833-64758637 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 45-154
Cow position: chr5:7140168-7140056 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 55, 0

Conread position: 45-157
Cow position: chr5:30293632-30293517 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 45-158
Cow position: chr5:51801032-51800918 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 45-160
Cow position: chr5:16509036-16509157 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 45-161
Cow position: chr5:58144661-58144542 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 45-163
Cow position: chr5:56820322-56820202 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 15

Conread position: 45-164
Cow position: chr5:45273560-45273441 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 46

Conread position: 45-176
Cow position: chr5:40039830-40039694 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 111
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 45-202
Cow position: chr5:28927649-28927485 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 45-210
Cow position: chr5:17999552-17999386 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 119
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 45-213
Cow position: chr5:16893833-16893658 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 45-213
Cow position: chr5:51935132-51935302 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 115, 56

Conread position: 45-214
Cow position: chr5:11769208-11769383 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 45-214
Cow position: chr5:19752245-19752416 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 56, 124

Conread position: 45-214
Cow position: chr5:54350423-54350247 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 9, 15

Conread position: 45-214
Cow position: chr5:55928881-55929058 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 45-215
Cow position: chr5:28224394-28224567 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 62, 53

Conread position: 45-218
Cow position: chr5:458431-458607 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 115, 61

Conread position: 45-218
Cow position: chr5:2309616-2309437 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 50, 28

Conread position: 45-218
Cow position: chr5:4032052-4031867 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 45-218
Cow position: chr5:18289070-18289241 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 54, 95

Conread position: 45-218
Cow position: chr5:21040033-21039864 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 170, 33

Conread position: 45-218
Cow position: chr5:22445855-22446030 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 102, 12

Conread position: 45-218
Cow position: chr5:23678762-23678584 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 56, 164

Conread position: 45-218
Cow position: chr5:29827989-29828165 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 98, 49

Conread position: 45-218
Cow position: chr5:44796791-44796614 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 115, 34

Conread position: 45-218
Cow position: chr5:44848080-44847902 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 90, 47

Conread position: 45-218
Cow position: chr5:52165238-52165060 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 48, 151

Conread position: 45-218
Cow position: chr5:53710750-53710570 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 55, 0

Conread position: 45-218
Cow position: chr5:54311275-54311455 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 45-218
Cow position: chr5:63234886-63234710 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 14

Conread position: 45-219
Cow position: chr5:14550641-14550464 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 117, 55

Conread position: 45-224
Cow position: chr5:11668245-11668060 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 28, 54

Conread position: 45-224
Cow position: chr5:37808729-37808538 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 53, 28

Conread position: 45-253
Cow position: chr5:16214624-16214839 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 154
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 55, 156

Conread position: 46-163
Cow position: chr5:49685329-49685212 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 46-178
Cow position: chr5:60747337-60747202 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 46-196
Cow position: chr5:63627584-63627432 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 32

Conread position: 46-212
Cow position: chr5:30845054-30845222 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 53, 20

Conread position: 46-214
Cow position: chr5:28035682-28035857 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 46-214
Cow position: chr5:41294022-41294194 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 43, 83

Conread position: 46-215
Cow position: chr5:13717626-13717455 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 114, 89

Conread position: 47-214
Cow position: chr5:15470875-15471043 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 47, 10

Conread position: 47-214
Cow position: chr5:52645136-52644966 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 113, 11

Conread position: 52-212
Cow position: chr5:23357283-23357441 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 56-141
Cow position: chr5:17644704-17644617 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 78
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 56-178
Cow position: chr5:34528506-34528625 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 56-202
Cow position: chr5:57994916-57994769 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 104, 45

Conread position: 56-213
Cow position: chr5:37646595-37646431 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 138

Conread position: 56-213
Cow position: chr5:52000173-52000331 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 125
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 44, 126

Conread position: 56-213
Cow position: chr5:67212307-67212474 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 56-214
Cow position: chr5:72564713-72564878 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 40, 0

Conread position: 56-215
Cow position: chr5:18574124-18574288 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 56-215
Cow position: chr5:43992273-43992439 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 28, 0

Conread position: 56-216
Cow position: chr5:55955858-55956029 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 149

Conread position: 56-218
Cow position: chr5:32696872-32696704 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 135

Conread position: 56-218
Cow position: chr5:39258467-39258624 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 104, 18

Conread position: 56-218
Cow position: chr5:45420183-45420018 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 103, 44

Conread position: 56-218
Cow position: chr5:66972379-66972548 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 56-253
Cow position: chr5:15479075-15479277 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 38, 160

Conread position: 57-210
Cow position: chr5:4617319-4617481 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 49, 151

Conread position: 57-214
Cow position: chr5:47323417-47323576 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 130
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 103, 50

Conread position: 57-214
Cow position: chr5:50575737-50575897 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 103, 143

Conread position: 57-214
Cow position: chr5:57156362-57156198 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 79, 44

Conread position: 57-218
Cow position: chr5:63987497-63987327 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 44, 117

Conread position: 57-219
Cow position: chr5:4280400-4280568 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 77, 44

Conread position: 58-196
Cow position: chr5:44994089-44993946 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 58-214
Cow position: chr5:30805121-30805278 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 102, 20

Conread position: 58-215
Cow position: chr5:58555093-58555252 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 43, 24

Conread position: 58-215
Cow position: chr5:62142627-62142791 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 59-213
Cow position: chr5:54086497-54086651 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 43

Conread position: 59-218
Cow position: chr5:26262722-26262560 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 45, 110

Conread position: 59-252
Cow position: chr5:14904118-14903916 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 25, 133

Conread position: 60-213
Cow position: chr5:49501870-49501711 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 62-218
Cow position: chr5:55796008-55795847 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 95, 26

Conread position: 63-229
Cow position: chr5:35969493-35969662 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 94, 31

Conread position: 68-218
Cow position: chr5:41981333-41981487 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 70-214
Cow position: chr5:57101561-57101409 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 31, 0

Show alignments to all cow chromosomes.