Cow genome map

Conread name: rfce09c_d13.y1

Conread position: 7-158
Cow position: chr6:40761044-40761193 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 97, 34

Conread position: 10-218
Cow position: chr6:19695722-19695939 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 192

Conread position: 19-214
Cow position: chr6:19681599-19681397 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 74, 36

Conread position: 29-215
Cow position: chr6:61142627-61142433 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 17, 0

Conread position: 43-213
Cow position: chr6:38771238-38771407 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 115, 0

Conread position: 43-218
Cow position: chr6:17549029-17548841 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 43-218
Cow position: chr6:18144145-18144330 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 55, 23

Conread position: 43-235
Cow position: chr6:457131-457326 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 135
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 36

Conread position: 45-164
Cow position: chr6:43134984-43134865 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 45-178
Cow position: chr6:8804576-8804439 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 45-178
Cow position: chr6:23353507-23353642 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 100, 55

Conread position: 45-178
Cow position: chr6:62925043-62924904 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 107, 0

Conread position: 45-193
Cow position: chr6:38614770-38614926 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 45-194
Cow position: chr6:58370708-58370865 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 135

Conread position: 45-197
Cow position: chr6:16191628-16191789 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 45-210
Cow position: chr6:60118104-60118274 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 39

Conread position: 45-211
Cow position: chr6:37199576-37199403 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 56, 0

Conread position: 45-213
Cow position: chr6:4864594-4864420 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 45-213
Cow position: chr6:17997360-17997193 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 123, 17

Conread position: 45-213
Cow position: chr6:67281851-67282021 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 56, 37

Conread position: 45-214
Cow position: chr6:2584895-2585070 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 45-214
Cow position: chr6:12092039-12091865 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 45-214
Cow position: chr6:16288098-16287933 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 130, 50

Conread position: 45-214
Cow position: chr6:37149142-37149317 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 45-214
Cow position: chr6:38441130-38441300 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 111, 98

Conread position: 45-214
Cow position: chr6:62669823-62669993 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 115, 15

Conread position: 45-215
Cow position: chr6:11246717-11246896 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 45-215
Cow position: chr6:28318358-28318535 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 139
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 98, 52

Conread position: 45-218
Cow position: chr6:8788083-8787904 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 55, 36

Conread position: 45-218
Cow position: chr6:15242786-15242969 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 61, 0

Conread position: 45-218
Cow position: chr6:20196340-20196170 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 138
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 170, 28

Conread position: 45-218
Cow position: chr6:23402036-23401860 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 112, 60

Conread position: 45-218
Cow position: chr6:32268922-32268755 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 169, 43

Conread position: 45-218
Cow position: chr6:34196196-34196016 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 89, 0

Conread position: 45-218
Cow position: chr6:35993540-35993716 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 58, 21

Conread position: 45-218
Cow position: chr6:42565643-42565821 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 9, 14

Conread position: 45-218
Cow position: chr6:48803682-48803506 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 38, 147

Conread position: 45-218
Cow position: chr6:53519669-53519491 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 56

Conread position: 45-218
Cow position: chr6:54867468-54867650 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 141
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 39, 0

Conread position: 45-218
Cow position: chr6:66874304-66874482 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 93

Conread position: 45-224
Cow position: chr6:9008657-9008473 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 115, 0

Conread position: 45-228
Cow position: chr6:45065062-45064874 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 61

Conread position: 45-229
Cow position: chr6:21736934-21736749 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 15

Conread position: 45-229
Cow position: chr6:51674867-51675051 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 103, 34

Conread position: 45-229
Cow position: chr6:52901188-52901382 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 45-229
Cow position: chr6:68652399-68652207 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 45-241
Cow position: chr6:38641448-38641645 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 48, 125

Conread position: 45-247
Cow position: chr6:50984180-50984381 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 143
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 133, 22

Conread position: 45-265
Cow position: chr6:12845339-12845555 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 56

Conread position: 46-211
Cow position: chr6:10695822-10695985 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 101, 59

Conread position: 46-214
Cow position: chr6:15447248-15447070 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 49, 0

Conread position: 46-214
Cow position: chr6:19292754-19292929 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 57, 16

Conread position: 46-215
Cow position: chr6:60057699-60057526 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 116, 0

Conread position: 46-215
Cow position: chr6:62371219-62371052 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 119
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 46-218
Cow position: chr6:60739971-60740147 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 111, 59

Conread position: 46-218
Cow position: chr6:65264583-65264413 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 144, 55

Conread position: 46-229
Cow position: chr6:35435947-35436138 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 47-213
Cow position: chr6:37783358-37783527 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 33, 11

Conread position: 47-215
Cow position: chr6:582315-582144 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 59, 11

Conread position: 48-160
Cow position: chr6:28148793-28148905 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 96
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 63, 10

Conread position: 48-168
Cow position: chr6:46998181-46998061 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 48-213
Cow position: chr6:51399042-51399201 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 112, 12

Conread position: 48-218
Cow position: chr6:53932889-53932714 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 106, 9

Conread position: 49-164
Cow position: chr6:54140754-54140871 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 57, 0

Conread position: 49-215
Cow position: chr6:65259533-65259362 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 72

Conread position: 53-213
Cow position: chr6:12337952-12338126 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 5

Conread position: 56-159
Cow position: chr6:44984295-44984399 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 56-162
Cow position: chr6:30688650-30688543 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 56-175
Cow position: chr6:11169663-11169787 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 56-178
Cow position: chr6:12542968-12542838 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 56-197
Cow position: chr6:6673069-6673206 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 56-203
Cow position: chr6:30974012-30974159 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 56-214
Cow position: chr6:1429606-1429768 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 116
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 104, 0

Conread position: 56-214
Cow position: chr6:12669068-12669223 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 56-214
Cow position: chr6:37395443-37395272 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 56-218
Cow position: chr6:7190154-7189986 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 36, 69

Conread position: 56-218
Cow position: chr6:19446218-19446383 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 36, 0

Conread position: 56-218
Cow position: chr6:47306173-47306016 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 117
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 56-218
Cow position: chr6:47339392-47339223 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 48, 23

Conread position: 56-218
Cow position: chr6:55535784-55535619 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 45, 128

Conread position: 56-218
Cow position: chr6:59069661-59069487 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 56-219
Cow position: chr6:10176331-10176168 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 101, 38

Conread position: 57-211
Cow position: chr6:18049058-18048899 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 41, 0

Conread position: 57-253
Cow position: chr6:24781588-24781392 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 158, 145

Conread position: 58-202
Cow position: chr6:19013034-19013186 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 58-218
Cow position: chr6:9751086-9750924 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 23

Conread position: 58-218
Cow position: chr6:15300859-15300700 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 157, 42

Conread position: 58-229
Cow position: chr6:37462985-37463166 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 37, 0

Conread position: 59-213
Cow position: chr6:143403-143248 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 88, 20

Conread position: 59-213
Cow position: chr6:16103228-16103070 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 59-213
Cow position: chr6:47799260-47799420 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 0

Conread position: 59-218
Cow position: chr6:5114079-5113920 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 153, 35

Conread position: 59-229
Cow position: chr6:35990267-35990090 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 101, 0

Conread position: 60-218
Cow position: chr6:19131398-19131563 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 62-218
Cow position: chr6:12964823-12964985 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 63-196
Cow position: chr6:47885050-47884913 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 94-214
Cow position: chr6:26450318-26450440 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 67, 0

Show alignments to all cow chromosomes.