Cow genome map

Conread name: rfce17c_a1.y1

Conread position: 2-145
Cow position:
Alignm length: 145
Alignm identity: 108
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 54, 22

Conread position: 3-155
Cow position:
Alignm length: 154
Alignm identity: 110
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 53, 17

Conread position: 4-157
Cow position:
Alignm length: 155
Alignm identity: 117
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 53, 0

Conread position: 5-133
Cow position:
Alignm length: 130
Alignm identity: 102
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 49, 25

Conread position: 5-144
Cow position:
Alignm length: 141
Alignm identity: 111
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 52, 127

Conread position: 5-145
Cow position:
Alignm length: 146
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 39, 20

Conread position: 5-157
Cow position:
Alignm length: 154
Alignm identity: 113
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 52, 31

Conread position: 5-157
Cow position:
Alignm length: 154
Alignm identity: 112
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 51, 114

Conread position: 6-138
Cow position:
Alignm length: 133
Alignm identity: 104
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 6-148
Cow position:
Alignm length: 147
Alignm identity: 113
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 21, 65

Conread position: 6-157
Cow position:
Alignm length: 153
Alignm identity: 117
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 20, 47

Conread position: 8-138
Cow position:
Alignm length: 133
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 8-161
Cow position:
Alignm length: 155
Alignm identity: 116
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 41, 12

Conread position: 9-124
Cow position:
Alignm length: 118
Alignm identity: 94
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 48, 93

Conread position: 9-146
Cow position:
Alignm length: 139
Alignm identity: 111
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 47, 10

Conread position: 9-157
Cow position:
Alignm length: 151
Alignm identity: 119
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 48, 14

Conread position: 10-146
Cow position:
Alignm length: 140
Alignm identity: 111
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 46, 21

Conread position: 10-147
Cow position:
Alignm length: 142
Alignm identity: 109
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 28, 55

Conread position: 10-147
Cow position:
Alignm length: 141
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 24, 123

Conread position: 10-148
Cow position:
Alignm length: 140
Alignm identity: 112
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 46, 0

Conread position: 10-148
Cow position:
Alignm length: 140
Alignm identity: 105
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 48, 20

Conread position: 10-156
Cow position:
Alignm length: 148
Alignm identity: 115
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 46, 88

Conread position: 10-157
Cow position:
Alignm length: 149
Alignm identity: 111
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 46, 26

Conread position: 10-157
Cow position:
Alignm length: 150
Alignm identity: 113
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 10-157
Cow position:
Alignm length: 151
Alignm identity: 114
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 46, 27

Conread position: 11-140
Cow position:
Alignm length: 131
Alignm identity: 100
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 11-142
Cow position:
Alignm length: 132
Alignm identity: 105
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 11-144
Cow position:
Alignm length: 135
Alignm identity: 111
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 45, 0

Conread position: 11-147
Cow position:
Alignm length: 138
Alignm identity: 104
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 45, 0

Conread position: 11-147
Cow position:
Alignm length: 138
Alignm identity: 105
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 11-148
Cow position:
Alignm length: 139
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 11-161
Cow position:
Alignm length: 152
Alignm identity: 109
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 11-161
Cow position:
Alignm length: 151
Alignm identity: 120
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 24, 0

Conread position: 12-106
Cow position:
Alignm length: 96
Alignm identity: 81
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 44, 19

Conread position: 12-144
Cow position:
Alignm length: 135
Alignm identity: 107
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 92

Conread position: 12-157
Cow position:
Alignm length: 148
Alignm identity: 125
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 44, 0

Conread position: 12-157
Cow position:
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 12, 119

Conread position: 12-161
Cow position:
Alignm length: 151
Alignm identity: 120
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 44, 78

Conread position: 13-138
Cow position:
Alignm length: 127
Alignm identity: 102
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 43, 30

Conread position: 13-143
Cow position:
Alignm length: 132
Alignm identity: 106
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 43, 110

Conread position: 13-157
Cow position:
Alignm length: 145
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 13-157
Cow position:
Alignm length: 146
Alignm identity: 105
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 13-157
Cow position:
Alignm length: 146
Alignm identity: 118
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 43, 67

Conread position: 14-155
Cow position:
Alignm length: 144
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 25, 104

Conread position: 14-157
Cow position:
Alignm length: 145
Alignm identity: 107
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 14-161
Cow position:
Alignm length: 149
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 89

Conread position: 15-147
Cow position:
Alignm length: 134
Alignm identity: 102
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 41, 21

Conread position: 15-148
Cow position:
Alignm length: 136
Alignm identity: 102
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 18-157
Cow position:
Alignm length: 144
Alignm identity: 111
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 34, 13

Conread position: 18-161
Cow position:
Alignm length: 146
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 85

Conread position: 19-147
Cow position:
Alignm length: 132
Alignm identity: 102
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 19-156
Cow position:
Alignm length: 139
Alignm identity: 110
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 37, 0

Conread position: 19-157
Cow position:
Alignm length: 144
Alignm identity: 112
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 37, 19

Conread position: 19-157
Cow position:
Alignm length: 140
Alignm identity: 113
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 37, 12

Conread position: 20-114
Cow position:
Alignm length: 96
Alignm identity: 80
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 20-138
Cow position:
Alignm length: 120
Alignm identity: 97
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 36, 61

Conread position: 20-142
Cow position:
Alignm length: 124
Alignm identity: 101
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 36, 0

Conread position: 20-145
Cow position:
Alignm length: 127
Alignm identity: 104
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 36, 0

Conread position: 20-145
Cow position:
Alignm length: 126
Alignm identity: 98
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 20-146
Cow position:
Alignm length: 129
Alignm identity: 101
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 6, 0

Conread position: 20-146
Cow position:
Alignm length: 128
Alignm identity: 104
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 36, 0

Conread position: 20-147
Cow position:
Alignm length: 129
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 20-148
Cow position:
Alignm length: 135
Alignm identity: 105
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 36, 86

Conread position: 20-148
Cow position:
Alignm length: 136
Alignm identity: 112
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 6, 87

Conread position: 20-150
Cow position:
Alignm length: 132
Alignm identity: 105
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 37, 90

Conread position: 20-154
Cow position:
Alignm length: 136
Alignm identity: 107
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 36, 17

Conread position: 20-155
Cow position:
Alignm length: 137
Alignm identity: 104
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 36, 17

Conread position: 20-156
Cow position:
Alignm length: 138
Alignm identity: 109
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 36, 103

Conread position: 20-156
Cow position:
Alignm length: 138
Alignm identity: 107
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 36, 17

Conread position: 20-156
Cow position:
Alignm length: 138
Alignm identity: 104
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 36, 29

Conread position: 20-157
Cow position:
Alignm length: 141
Alignm identity: 111
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 20-157
Cow position:
Alignm length: 139
Alignm identity: 115
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 37, 0

Conread position: 20-157
Cow position:
Alignm length: 146
Alignm identity: 110
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 20-157
Cow position:
Alignm length: 140
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 5, 42

Conread position: 20-157
Cow position:
Alignm length: 140
Alignm identity: 107
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 36, 87

Conread position: 20-159
Cow position:
Alignm length: 142
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 91

Conread position: 20-161
Cow position:
Alignm length: 143
Alignm identity: 111
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 35, 0

Conread position: 20-161
Cow position:
Alignm length: 143
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 20-161
Cow position:
Alignm length: 143
Alignm identity: 116
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 36, 133

Conread position: 21-156
Cow position:
Alignm length: 137
Alignm identity: 106
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 35, 15

Conread position: 23-114
Cow position:
Alignm length: 93
Alignm identity: 80
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 24-148
Cow position:
Alignm length: 128
Alignm identity: 102
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 32, 12

Conread position: 25-146
Cow position:
Alignm length: 123
Alignm identity: 99
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 31, 82

Conread position: 25-146
Cow position:
Alignm length: 123
Alignm identity: 105
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 31, 95

Conread position: 25-147
Cow position:
Alignm length: 125
Alignm identity: 100
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 25-155
Cow position:
Alignm length: 135
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 11

Conread position: 25-156
Cow position:
Alignm length: 133
Alignm identity: 103
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 25-156
Cow position:
Alignm length: 133
Alignm identity: 104
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 25-156
Cow position:
Alignm length: 133
Alignm identity: 108
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 30, 0

Conread position: 25-157
Cow position:
Alignm length: 134
Alignm identity: 111
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 31, 11

Conread position: 25-157
Cow position:
Alignm length: 134
Alignm identity: 105
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 53

Conread position: 26-148
Cow position:
Alignm length: 126
Alignm identity: 101
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 30, 11

Conread position: 26-157
Cow position:
Alignm length: 133
Alignm identity: 102
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 26-161
Cow position:
Alignm length: 137
Alignm identity: 110
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 30, 0

Conread position: 27-161
Cow position:
Alignm length: 136
Alignm identity: 105
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 30, 16

Conread position: 27-162
Cow position:
Alignm length: 143
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 28-148
Cow position:
Alignm length: 122
Alignm identity: 98
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 29, 79

Conread position: 28-157
Cow position:
Alignm length: 131
Alignm identity: 105
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 28, 50

Conread position: 29-148
Cow position:
Alignm length: 121
Alignm identity: 98
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 26, 0

Conread position: 30-156
Cow position:
Alignm length: 128
Alignm identity: 98
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 30-157
Cow position:
Alignm length: 129
Alignm identity: 100
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 60

Conread position: 30-159
Cow position:
Alignm length: 131
Alignm identity: 101
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 26, 98

Conread position: 31-145
Cow position:
Alignm length: 118
Alignm identity: 96
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 31-146
Cow position:
Alignm length: 119
Alignm identity: 96
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 25, 84

Conread position: 32-144
Cow position:
Alignm length: 114
Alignm identity: 90
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 32-147
Cow position:
Alignm length: 116
Alignm identity: 92
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 33-146
Cow position:
Alignm length: 115
Alignm identity: 92
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 23, 30

Conread position: 33-157
Cow position:
Alignm length: 126
Alignm identity: 103
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 21, 0

Conread position: 33-157
Cow position:
Alignm length: 132
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 33-161
Cow position:
Alignm length: 131
Alignm identity: 110
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 24, 0

Conread position: 34-157
Cow position:
Alignm length: 126
Alignm identity: 98
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 6, 77

Conread position: 34-157
Cow position:
Alignm length: 125
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 23, 109

Conread position: 36-147
Cow position:
Alignm length: 113
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 36-157
Cow position:
Alignm length: 123
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 37-148
Cow position:
Alignm length: 113
Alignm identity: 93
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 19, 61

Conread position: 37-148
Cow position:
Alignm length: 113
Alignm identity: 94
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 19, 0

Conread position: 38-148
Cow position:
Alignm length: 112
Alignm identity: 88
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 45-157
Cow position:
Alignm length: 114
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 45

Conread position: 45-161
Cow position:
Alignm length: 118
Alignm identity: 96
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 49-161
Cow position:
Alignm length: 114
Alignm identity: 92
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 5, 38

Show alignments to all cow chromosomes.