Cow genome map

Conread name: rfce17c_a1.y1

Conread position: 1-157
Cow position: chr20:5950364-5950523 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 2-163
Cow position: chr20:19622973-19623130 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 55, 101

Conread position: 3-140
Cow position: chr20:26561940-26562080 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 4-148
Cow position: chr20:41089523-41089666 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 53, 15

Conread position: 4-161
Cow position: chr20:5365200-5365042 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 12, 0

Conread position: 5-156
Cow position: chr20:10200620-10200467 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 126
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 38, 0

Conread position: 5-157
Cow position: chr20:33359197-33359353 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 81

Conread position: 5-161
Cow position: chr20:24712111-24711957 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 127
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 5, 66

Conread position: 6-157
Cow position: chr20:13023233-13023382 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 51, 115

Conread position: 6-157
Cow position: chr20:30744455-30744601 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 12

Conread position: 7-147
Cow position: chr20:6054239-6054379 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 122
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 47, 73

Conread position: 8-144
Cow position: chr20:27323536-27323399 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 8-157
Cow position: chr20:18763399-18763254 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 49, 10

Conread position: 8-157
Cow position: chr20:34097682-34097833 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 129
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 48, 12

Conread position: 8-161
Cow position: chr20:11920470-11920616 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 48, 11

Conread position: 9-156
Cow position: chr20:3141841-3141695 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 123
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 47, 55

Conread position: 9-156
Cow position: chr20:33557659-33557514 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 9-157
Cow position: chr20:11135488-11135633 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 27

Conread position: 9-157
Cow position: chr20:13995076-13994934 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 47, 56

Conread position: 9-157
Cow position: chr20:30639512-30639663 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 48, 0

Conread position: 9-161
Cow position: chr20:14490505-14490362 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 10-144
Cow position: chr20:3035605-3035466 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 10-145
Cow position: chr20:1139502-1139636 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 26

Conread position: 10-146
Cow position: chr20:6502155-6502018 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 102
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 10-147
Cow position: chr20:18500795-18500657 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 46, 0

Conread position: 10-147
Cow position: chr20:32636068-32636200 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 46, 92

Conread position: 10-147
Cow position: chr20:41323093-41323234 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 21, 57

Conread position: 10-156
Cow position: chr20:14283188-14283041 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 121
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 46, 0

Conread position: 10-157
Cow position: chr20:17524539-17524392 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 47, 26

Conread position: 10-157
Cow position: chr20:20967579-20967441 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 64, 36

Conread position: 10-157
Cow position: chr20:25021697-25021547 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 124
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 16, 0

Conread position: 10-157
Cow position: chr20:35742035-35741888 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 10

Conread position: 11-146
Cow position: chr20:17733290-17733428 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 26, 113

Conread position: 11-157
Cow position: chr20:17369979-17370133 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 13, 135

Conread position: 11-157
Cow position: chr20:34251405-34251552 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 26

Conread position: 12-125
Cow position: chr20:41386135-41386021 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 12-161
Cow position: chr20:40442199-40442351 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 13-144
Cow position: chr20:6962080-6962208 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 13-153
Cow position: chr20:17251981-17251841 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 43, 96

Conread position: 13-161
Cow position: chr20:37358122-37357972 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 18, 0

Conread position: 14-126
Cow position: chr20:31311793-31311680 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 14-148
Cow position: chr20:36097784-36097649 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 14-157
Cow position: chr20:11909424-11909567 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 14-157
Cow position: chr20:19328659-19328508 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 14-161
Cow position: chr20:29845317-29845167 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 19, 127

Conread position: 15-147
Cow position: chr20:34271591-34271457 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 15-157
Cow position: chr20:29755039-29754896 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 120
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 12, 124

Conread position: 16-157
Cow position: chr20:20459851-20459710 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 41, 131

Conread position: 18-156
Cow position: chr20:4944993-4945133 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 117
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 38, 0

Conread position: 19-148
Cow position: chr20:39016614-39016743 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 37, 11

Conread position: 19-157
Cow position: chr20:14755587-14755720 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 88

Conread position: 20-148
Cow position: chr20:20892421-20892549 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 37, 22

Conread position: 20-155
Cow position: chr20:5814820-5814688 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 32, 0

Conread position: 20-156
Cow position: chr20:4755579-4755712 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 36, 100

Conread position: 20-156
Cow position: chr20:35310584-35310447 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 36, 16

Conread position: 20-157
Cow position: chr20:10486101-10486238 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 102

Conread position: 20-157
Cow position: chr20:14433165-14433301 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 36, 110

Conread position: 20-157
Cow position: chr20:20202475-20202339 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 7, 17

Conread position: 20-157
Cow position: chr20:29990194-29990328 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 32, 0

Conread position: 20-161
Cow position: chr20:39417647-39417787 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 6, 31

Conread position: 21-148
Cow position: chr20:39518265-39518135 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 36, 46

Conread position: 21-157
Cow position: chr20:9033962-9034099 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 39, 0

Conread position: 22-161
Cow position: chr20:28935389-28935529 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 23-145
Cow position: chr20:28296550-28296427 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 24-154
Cow position: chr20:14460635-14460504 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 33, 0

Conread position: 25-123
Cow position: chr20:36366068-36365970 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 83
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 31, 11

Conread position: 25-144
Cow position: chr20:19201784-19201664 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 31, 0

Conread position: 25-146
Cow position: chr20:20124781-20124903 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 25-156
Cow position: chr20:22851726-22851594 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 26-137
Cow position: chr20:6473984-6473872 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 26-147
Cow position: chr20:7934527-7934412 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 31, 59

Conread position: 27-148
Cow position: chr20:25464798-25464916 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 29, 70

Conread position: 27-148
Cow position: chr20:36741709-36741592 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 28-156
Cow position: chr20:6248352-6248480 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 28, 43

Conread position: 28-156
Cow position: chr20:37609870-37609741 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 30-156
Cow position: chr20:34202887-34202756 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 30-157
Cow position: chr20:5268595-5268723 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 30-161
Cow position: chr20:14739575-14739705 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 32

Conread position: 31-146
Cow position: chr20:8679416-8679532 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 31-161
Cow position: chr20:297760-297892 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 26, 0

Conread position: 32-148
Cow position: chr20:12126058-12126175 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 24, 0

Conread position: 32-148
Cow position: chr20:33434916-33435031 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 98
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 24, 58

Conread position: 32-161
Cow position: chr20:13876466-13876595 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 97
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 33-161
Cow position: chr20:24883118-24883248 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 23, 0

Conread position: 35-161
Cow position: chr20:11008413-11008286 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 21, 0

Conread position: 37-148
Cow position: chr20:26054986-26055098 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 96
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 41-157
Cow position: chr20:30817755-30817638 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 44-147
Cow position: chr20:16291922-16291818 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 0

Conread position: 53-155
Cow position: chr20:354677-354779 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.