Cow genome map

Conread name: rfce17c_a1.y1

Conread position: 1-148
Cow position: chr23:19822232-19822380 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 37

Conread position: 3-144
Cow position: chr23:8260699-8260559 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 123, 28

Conread position: 4-157
Cow position: chr23:40542039-40542192 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 13, 34

Conread position: 6-157
Cow position: chr23:27526814-27526664 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 37

Conread position: 7-135
Cow position: chr23:17479429-17479300 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 97
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 7-157
Cow position: chr23:4003877-4003726 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 49, 0

Conread position: 7-157
Cow position: chr23:24779304-24779463 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 8-148
Cow position: chr23:35239576-35239439 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 19, 11

Conread position: 8-157
Cow position: chr23:307686-307535 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 131
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 5, 0

Conread position: 8-157
Cow position: chr23:17792199-17792345 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 50, 23

Conread position: 8-161
Cow position: chr23:9876777-9876923 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 48, 23

Conread position: 9-144
Cow position: chr23:35527311-35527172 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 14, 0

Conread position: 9-161
Cow position: chr23:4465737-4465891 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 126
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 45, 0

Conread position: 9-161
Cow position: chr23:16447470-16447613 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 45, 10

Conread position: 10-121
Cow position: chr23:2179435-2179549 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 10-138
Cow position: chr23:34875788-34875660 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 46, 113

Conread position: 10-147
Cow position: chr23:40965755-40965892 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 46, 27

Conread position: 10-156
Cow position: chr23:40737786-40737938 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 10-157
Cow position: chr23:5436416-5436563 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 46, 13

Conread position: 10-161
Cow position: chr23:1798338-1798186 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 36, 20

Conread position: 10-161
Cow position: chr23:2471231-2471078 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 14, 0

Conread position: 11-135
Cow position: chr23:16613383-16613507 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 46, 14

Conread position: 11-148
Cow position: chr23:7856987-7856848 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 15, 0

Conread position: 11-156
Cow position: chr23:38254-38108 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 117
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 45, 0

Conread position: 11-156
Cow position: chr23:26794689-26794837 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 43, 0

Conread position: 11-157
Cow position: chr23:3270522-3270378 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 45, 14

Conread position: 11-157
Cow position: chr23:32621512-32621365 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 121
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 46, 0

Conread position: 11-161
Cow position: chr23:2563888-2563738 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 110
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 45, 135

Conread position: 12-127
Cow position: chr23:14363389-14363272 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 12-156
Cow position: chr23:4291580-4291435 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 12-156
Cow position: chr23:39813725-39813580 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 45, 0

Conread position: 12-157
Cow position: chr23:18387365-18387511 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 44, 13

Conread position: 12-161
Cow position: chr23:40494556-40494394 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 0

Conread position: 13-157
Cow position: chr23:4416063-4416208 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 43, 0

Conread position: 13-157
Cow position: chr23:20557620-20557765 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 24

Conread position: 13-157
Cow position: chr23:30617253-30617399 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 13, 0

Conread position: 13-161
Cow position: chr23:4803184-4803034 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 124
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 43, 7

Conread position: 14-107
Cow position: chr23:15286928-15287024 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 83
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 14-157
Cow position: chr23:1656115-1655974 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 42, 76

Conread position: 14-161
Cow position: chr23:25087183-25087326 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 16, 38

Conread position: 15-157
Cow position: chr23:3247809-3247668 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 107
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 42, 107

Conread position: 17-147
Cow position: chr23:5605481-5605352 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 21

Conread position: 17-147
Cow position: chr23:5612741-5612612 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 21

Conread position: 19-129
Cow position: chr23:12031628-12031514 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 95
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 19-146
Cow position: chr23:5436784-5436913 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 19-156
Cow position: chr23:39302910-39302772 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 38, 0

Conread position: 19-160
Cow position: chr23:21539376-21539231 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 20-100
Cow position: chr23:31299459-31299377 (view UCSC Genome Browser custom track)
Alignm length: 83
Alignm identity: 76
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 20-125
Cow position: chr23:1614441-1614544 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 92
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 6, 90

Conread position: 20-125
Cow position: chr23:25726556-25726453 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 20-147
Cow position: chr23:1337091-1337219 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 106
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 13, 123

Conread position: 20-147
Cow position: chr23:1725557-1725429 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 20-147
Cow position: chr23:13836937-13836809 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 36, 16

Conread position: 20-147
Cow position: chr23:18611548-18611675 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 36, 24

Conread position: 20-156
Cow position: chr23:3890356-3890494 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 5, 109

Conread position: 20-156
Cow position: chr23:17462807-17462670 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 20-157
Cow position: chr23:10676070-10675931 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 111
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 6, 0

Conread position: 20-157
Cow position: chr23:26975252-26975385 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 113
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 36, 81

Conread position: 20-159
Cow position: chr23:9874876-9874731 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 0

Conread position: 20-161
Cow position: chr23:2110993-2110852 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 117
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 36, 103

Conread position: 20-161
Cow position: chr23:28580366-28580511 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 6, 0

Conread position: 20-161
Cow position: chr23:39056973-39056832 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 135, 40

Conread position: 21-146
Cow position: chr23:2186849-2186974 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 35, 15

Conread position: 21-161
Cow position: chr23:5314742-5314603 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 105, 40

Conread position: 23-157
Cow position: chr23:1648051-1647919 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 112
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 33, 118

Conread position: 23-157
Cow position: chr23:1759459-1759326 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 33, 79

Conread position: 23-157
Cow position: chr23:3244703-3244840 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 33, 0

Conread position: 23-161
Cow position: chr23:13553491-13553626 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 34, 56

Conread position: 24-148
Cow position: chr23:37436350-37436225 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 24-161
Cow position: chr23:187390-187254 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 33, 79

Conread position: 25-135
Cow position: chr23:18424298-18424186 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 25-154
Cow position: chr23:20596379-20596507 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 31, 91

Conread position: 25-157
Cow position: chr23:799455-799589 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 7, 0

Conread position: 26-157
Cow position: chr23:27307957-27307825 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 26-161
Cow position: chr23:10853255-10853121 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 31, 10

Conread position: 27-145
Cow position: chr23:18740007-18740126 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 27-155
Cow position: chr23:22573698-22573827 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 97
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 28-148
Cow position: chr23:1480849-1480728 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 28-161
Cow position: chr23:16582701-16582834 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 105
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 29, 10

Conread position: 28-161
Cow position: chr23:33434870-33434736 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 94, 0

Conread position: 29-161
Cow position: chr23:38738521-38738389 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 27, 81

Conread position: 30-148
Cow position: chr23:20397262-20397381 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 92
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 30-156
Cow position: chr23:37948894-37948767 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 67

Conread position: 31-156
Cow position: chr23:18739257-18739383 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 106
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 24, 0

Conread position: 31-157
Cow position: chr23:4521677-4521805 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 26, 0

Conread position: 31-157
Cow position: chr23:35656613-35656487 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 25, 80

Conread position: 32-148
Cow position: chr23:1739660-1739543 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 32-156
Cow position: chr23:11081461-11081336 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 25, 0

Conread position: 32-157
Cow position: chr23:9726336-9726462 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 24, 0

Conread position: 34-156
Cow position: chr23:3982989-3983110 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 35-147
Cow position: chr23:32126505-32126392 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 35-157
Cow position: chr23:29607274-29607151 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 40-146
Cow position: chr23:4343679-4343572 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 16, 0

Show alignments to all cow chromosomes.