Cow genome map

Conread name: rfce17c_a1.y1

Conread position: 1-157
Cow position: chr24:19763322-19763478 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 55, 9

Conread position: 5-147
Cow position: chr24:19769074-19768929 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 6-148
Cow position: chr24:27323753-27323615 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 6-157
Cow position: chr24:12241925-12241771 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 25, 0

Conread position: 7-161
Cow position: chr24:36286769-36286618 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 49, 95

Conread position: 8-156
Cow position: chr24:2358985-2359128 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 85

Conread position: 8-157
Cow position: chr24:18750910-18750760 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 125
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 48, 0

Conread position: 8-157
Cow position: chr24:21519632-21519480 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 8-157
Cow position: chr24:22420163-22420013 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 24, 0

Conread position: 8-157
Cow position: chr24:35210260-35210107 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 26, 0

Conread position: 8-161
Cow position: chr24:44896240-44896087 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 27, 12

Conread position: 9-145
Cow position: chr24:18281436-18281573 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 101
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 47, 0

Conread position: 9-148
Cow position: chr24:39523248-39523387 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 23, 105

Conread position: 9-148
Cow position: chr24:44775974-44776115 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 9-157
Cow position: chr24:36035852-36036005 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 47, 145

Conread position: 9-161
Cow position: chr24:40055314-40055463 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 10-122
Cow position: chr24:36906547-36906433 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 10-127
Cow position: chr24:28303162-28303284 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 10-147
Cow position: chr24:39910832-39910971 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 118
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 14, 0

Conread position: 10-148
Cow position: chr24:8677026-8676885 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 10, 108

Conread position: 10-148
Cow position: chr24:18811031-18810893 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 16, 38

Conread position: 10-154
Cow position: chr24:15861394-15861538 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 44, 28

Conread position: 10-156
Cow position: chr24:36131-35981 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 10, 122

Conread position: 10-157
Cow position: chr24:12121098-12120949 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 16, 0

Conread position: 10-157
Cow position: chr24:39488545-39488397 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 47, 25

Conread position: 10-159
Cow position: chr24:18405081-18405230 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 46, 112

Conread position: 10-161
Cow position: chr24:11028489-11028640 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 126
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 46, 122

Conread position: 11-135
Cow position: chr24:23637608-23637727 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 8

Conread position: 11-146
Cow position: chr24:37267862-37267726 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 11-148
Cow position: chr24:20017230-20017366 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 45, 19

Conread position: 11-157
Cow position: chr24:26588415-26588273 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 46, 100

Conread position: 11-157
Cow position: chr24:38006514-38006665 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 11-161
Cow position: chr24:3404812-3404667 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 45, 96

Conread position: 11-161
Cow position: chr24:38693679-38693830 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 123
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 13, 62

Conread position: 12-108
Cow position: chr24:40138811-40138908 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 12-146
Cow position: chr24:21606480-21606615 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 112
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 44, 0

Conread position: 12-148
Cow position: chr24:7917183-7917320 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 119
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 44, 0

Conread position: 12-155
Cow position: chr24:352407-352552 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 12-157
Cow position: chr24:3193075-3193220 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 45, 74

Conread position: 12-157
Cow position: chr24:11035316-11035457 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 40, 98

Conread position: 13-106
Cow position: chr24:39206284-39206378 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 14-147
Cow position: chr24:19801032-19800905 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 22

Conread position: 15-157
Cow position: chr24:250342-250485 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 42, 0

Conread position: 15-157
Cow position: chr24:31383301-31383168 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 39, 50

Conread position: 18-148
Cow position: chr24:27040240-27040109 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 18-156
Cow position: chr24:27066421-27066282 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 5, 68

Conread position: 19-161
Cow position: chr24:27906627-27906488 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 117
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 37, 63

Conread position: 20-107
Cow position: chr24:41436285-41436373 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 78
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 20-114
Cow position: chr24:27368166-27368071 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 20-121
Cow position: chr24:34079149-34079252 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 20-144
Cow position: chr24:25142805-25142675 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 20-146
Cow position: chr24:19624052-19623919 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 16

Conread position: 20-148
Cow position: chr24:13888893-13888764 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 20-148
Cow position: chr24:36554512-36554636 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 6, 84

Conread position: 20-151
Cow position: chr24:120730-120860 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 37, 54

Conread position: 20-153
Cow position: chr24:5413352-5413482 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 36, 29

Conread position: 20-154
Cow position: chr24:22567295-22567159 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 112
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 9, 0

Conread position: 20-155
Cow position: chr24:42862814-42862677 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 12, 0

Conread position: 20-156
Cow position: chr24:25947672-25947808 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 36, 16

Conread position: 20-157
Cow position: chr24:4634975-4635115 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 13, 0

Conread position: 20-157
Cow position: chr24:12200220-12200356 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 28, 48

Conread position: 20-157
Cow position: chr24:17308953-17309085 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 37, 80

Conread position: 20-157
Cow position: chr24:17689423-17689558 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 99, 41

Conread position: 20-157
Cow position: chr24:30483757-30483888 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 37, 10

Conread position: 20-157
Cow position: chr24:43373251-43373113 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 8, 98

Conread position: 20-161
Cow position: chr24:162188-162052 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 21-157
Cow position: chr24:20323311-20323449 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 35, 0

Conread position: 21-161
Cow position: chr24:44987190-44987326 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 25, 0

Conread position: 22-161
Cow position: chr24:27149568-27149432 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 34, 45

Conread position: 23-141
Cow position: chr24:29538131-29538244 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 33, 75

Conread position: 23-156
Cow position: chr24:19535067-19535202 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 23-161
Cow position: chr24:33098287-33098424 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 94

Conread position: 24-147
Cow position: chr24:18324096-18324218 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 32, 104

Conread position: 24-154
Cow position: chr24:32890861-32890988 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 80

Conread position: 24-156
Cow position: chr24:22079646-22079514 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 100
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 32, 12

Conread position: 25-125
Cow position: chr24:33238071-33238172 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 25-144
Cow position: chr24:19000226-19000105 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 25-145
Cow position: chr24:22155513-22155392 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 31, 104

Conread position: 25-148
Cow position: chr24:5152709-5152585 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 106
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 32, 0

Conread position: 25-148
Cow position: chr24:13586808-13586929 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 33, 93

Conread position: 25-155
Cow position: chr24:29587183-29587055 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 34, 58

Conread position: 25-156
Cow position: chr24:2261853-2261721 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 25-156
Cow position: chr24:11836218-11836350 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 25-156
Cow position: chr24:43027041-43027173 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 78, 32

Conread position: 25-157
Cow position: chr24:37252340-37252210 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 32, 77

Conread position: 25-157
Cow position: chr24:43445828-43445961 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 31, 97

Conread position: 25-161
Cow position: chr24:34301854-34301990 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 27-157
Cow position: chr24:36010607-36010470 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 28-156
Cow position: chr24:18702580-18702452 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 28, 114

Conread position: 31-148
Cow position: chr24:2992703-2992819 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 25, 79

Conread position: 32-146
Cow position: chr24:16641089-16640974 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 24, 0

Conread position: 32-151
Cow position: chr24:10031750-10031632 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 24, 56

Conread position: 32-156
Cow position: chr24:42984571-42984445 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 25, 0

Conread position: 32-161
Cow position: chr24:38427934-38428064 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 33-147
Cow position: chr24:34006031-34006146 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 35

Conread position: 36-141
Cow position: chr24:18874648-18874754 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 91
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 45-157
Cow position: chr24:27271092-27270979 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 53-148
Cow position: chr24:29505019-29505114 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 81
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.