Cow genome map
| Conread name: | rfce17c_a1.y1 |
| Conread position: | 1-148 |
| Cow position: | chr25:17725262-17725117 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 55, 17 |
| Conread position: | 3-147 |
| Cow position: | chr25:4192236-4192089 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 5-106 |
| Cow position: | chr25:22415526-22415427 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 16 |
| Conread position: | 5-157 |
| Cow position: | chr25:1838465-1838316 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 6-157 |
| Cow position: | chr25:7185050-7185201 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 29 |
| Conread position: | 7-157 |
| Cow position: | chr25:35802440-35802588 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 50, 63 |
| Conread position: | 8-141 |
| Cow position: | chr25:5808170-5808036 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 8-148 |
| Cow position: | chr25:5713043-5713179 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 8-156 |
| Cow position: | chr25:17119964-17119818 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 8-156 |
| Cow position: | chr25:30319228-30319377 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 22 |
| Conread position: | 9-148 |
| Cow position: | chr25:18551116-18551251 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 9-157 |
| Cow position: | chr25:22154254-22154099 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 9-157 |
| Cow position: | chr25:22203468-22203624 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 38, 129 |
| Conread position: | 9-161 |
| Cow position: | chr25:7380621-7380768 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 23 |
| Conread position: | 9-161 |
| Cow position: | chr25:11666847-11666695 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 48, 67 |
| Conread position: | 10-106 |
| Cow position: | chr25:12565167-12565267 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 10-144 |
| Cow position: | chr25:12755271-12755406 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 46, 111 |
| Conread position: | 10-147 |
| Cow position: | chr25:21547376-21547242 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 10-148 |
| Cow position: | chr25:3141722-3141587 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 16, 101 |
| Conread position: | 10-156 |
| Cow position: | chr25:14164417-14164271 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 10-156 |
| Cow position: | chr25:17919200-17919050 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 73 |
| Conread position: | 10-157 |
| Cow position: | chr25:432828-432973 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 10-157 |
| Cow position: | chr25:18201708-18201854 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 56 |
| Conread position: | 10-157 |
| Cow position: | chr25:36370041-36369893 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 10-157 |
| Cow position: | chr25:36375732-36375584 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 11-145 |
| Cow position: | chr25:20018366-20018230 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 12-156 |
| Cow position: | chr25:7311176-7311320 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 12-157 |
| Cow position: | chr25:9494927-9494780 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 12-157 |
| Cow position: | chr25:12305497-12305351 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 12-161 |
| Cow position: | chr25:30817110-30816960 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 13-121 |
| Cow position: | chr25:7643235-7643344 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 87 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 13-121 |
| Cow position: | chr25:21184104-21183994 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 13-148 |
| Cow position: | chr25:41378608-41378743 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 109 |
| Conread position: | 13-161 |
| Cow position: | chr25:14944907-14945057 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 12, 57 |
| Conread position: | 14-147 |
| Cow position: | chr25:22917281-22917409 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 5, 39 |
| Conread position: | 14-148 |
| Cow position: | chr25:16491313-16491182 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 42, 88 |
| Conread position: | 14-156 |
| Cow position: | chr25:7277109-7277250 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 104 |
| Conread position: | 18-161 |
| Cow position: | chr25:11857774-11857914 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 38, 91 |
| Conread position: | 19-146 |
| Cow position: | chr25:13732971-13732843 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 21, 114 |
| Conread position: | 20-114 |
| Cow position: | chr25:14212616-14212711 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 80 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 20-121 |
| Cow position: | chr25:14102880-14102777 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 20-144 |
| Cow position: | chr25:7358456-7358582 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 20-144 |
| Cow position: | chr25:30462112-30462235 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 20-147 |
| Cow position: | chr25:22373277-22373405 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 36, 16 |
| Conread position: | 20-148 |
| Cow position: | chr25:36872845-36872972 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 36, 83 |
| Conread position: | 20-157 |
| Cow position: | chr25:22642483-22642339 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 20-157 |
| Cow position: | chr25:33100782-33100650 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 20-157 |
| Cow position: | chr25:37648992-37648856 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 36, 91 |
| Conread position: | 20-161 |
| Cow position: | chr25:8410824-8410963 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 20-161 |
| Cow position: | chr25:16921584-16921726 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 20-161 |
| Cow position: | chr25:19850076-19849935 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 12, 36 |
| Conread position: | 23-156 |
| Cow position: | chr25:26087726-26087597 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 13, 80 |
| Conread position: | 23-156 |
| Cow position: | chr25:33311116-33311250 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 25-148 |
| Cow position: | chr25:28939935-28940057 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 25-157 |
| Cow position: | chr25:11957008-11956879 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 25-161 |
| Cow position: | chr25:22119449-22119586 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 27-144 |
| Cow position: | chr25:26989403-26989285 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 27-161 |
| Cow position: | chr25:17724017-17724152 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 28-147 |
| Cow position: | chr25:19460278-19460158 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 115 |
| Conread position: | 30-156 |
| Cow position: | chr25:5846605-5846733 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 31-143 |
| Cow position: | chr25:33272837-33272724 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 31-147 |
| Cow position: | chr25:12092818-12092699 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 33-140 |
| Cow position: | chr25:11096038-11096146 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 36-146 |
| Cow position: | chr25:14225561-14225448 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 36-148 |
| Cow position: | chr25:31514378-31514265 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 36-156 |
| Cow position: | chr25:6812033-6812159 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 36-157 |
| Cow position: | chr25:17658806-17658686 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 20, 61 |
| Conread position: | 49-157 |
| Cow position: | chr25:11855366-11855475 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
Show alignments to all cow chromosomes.